View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21637_low_15 (Length: 359)
Name: NF21637_low_15
Description: NF21637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21637_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 41866906 - 41866554
Alignment:
| Q |
1 |
atgatcattccaacttgaggaggaggagcaccataatcaaaaactgaagacgaagaagaagatggagcaacaccatctttatcacgtgcagcaacggttt |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41866906 |
atgatcaatccaacttgaggaggaggagcaccataatcaaaaactgaagacgaagaagaagatggagcaacaccatctttatcacgtgcagcaacggttt |
41866807 |
T |
|
| Q |
101 |
tctcaccttcgatctctctgaatcgttgaagataaatcttcaacggttcaacgtactcttcaaatcctaacgtagtcatcgcccaaagtagatcgtcgcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41866806 |
tctcaccttcgatctctctgaatcgttgaagataaatcttcaacggttcaacgtactcttcaaatcctaacgtagtcatcgcccaaagtagatcgtcgcc |
41866707 |
T |
|
| Q |
201 |
gttgatcgtctttcgtttctctctctgacacttatcggaagcttcaccggtgatgaagctgatgaactccgatacacattcctgcaccgtttccttagca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41866706 |
gttgatcgtctttcgtttctctctctgacacttatcggaagcttcaccggtgatgaagctgatgaactccgatacacattcctgcaccgtttccttagca |
41866607 |
T |
|
| Q |
301 |
tctttcgagatcttcgcgtttgctggtaacgccttcttcattattcttctcac |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41866606 |
tctttcgagatcttcgcgtttgctggtaacgccttcttcattattctgctcac |
41866554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 76 - 328
Target Start/End: Complemental strand, 23569989 - 23569737
Alignment:
| Q |
76 |
tctttatcacgtgcagcaacggttttctcaccttcgatctctctgaatcgttgaagataaatcttcaacggttcaacgtactcttcaaatcctaacgtag |
175 |
Q |
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| T |
23569989 |
tctttatcacgcgcccccacggtcttctcaccttccatctccctaaaccgttgaagataacctttcaacggctcaacatactcctcgaatcccaacgtcg |
23569890 |
T |
|
| Q |
176 |
tcatcgcccaaagtagatcgtcgccgttgatcgtctttcgtttctctctctgacacttatcggaagcttcaccggtgatgaagctgatgaactccgatac |
275 |
Q |
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||||||||||||| | ||| ||||||||||||||||| || ||||| | |||||||||||||| ||||| ||||||||||||||||||||||| || || |
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| T |
23569889 |
tcatcgcccaaagcaaatcatcgccgttgatcgtcttccgcttctcacgttgacacttatcggaggcttcgccggtgatgaagctgatgaactctgaaac |
23569790 |
T |
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| Q |
276 |
acattcctgcaccgtttccttagcatctttcgagatcttcgcgtttgctggta |
328 |
Q |
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||| || || || |||||||| || ||||| |||||||||||||| ||||||| |
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| T |
23569789 |
acactcttgaactgtttcctttgcgtcttttgagatcttcgcgttcgctggta |
23569737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 341
Target Start/End: Complemental strand, 9722856 - 9722663
Alignment:
| Q |
148 |
tcaacgtactcttcaaatcctaacgtagtcatcgcccaaagtagatcgtcgccgttgatcgtctttcgtttctctctctgacacttatcggaagcttcac |
247 |
Q |
| |
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||||| || ||||||||||| | || ||||| |||||||| ||||| || |||||||| || || | |||||| ||||||||||||| |||||||| | |
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| T |
9722856 |
tcaacataatcttcaaatccaagagttgtcatagcccaaagaagatcatcaccgttgattgttttcctcttctctttctgacacttatcagaagcttctc |
9722757 |
T |
|
| Q |
248 |
cggtgatgaagctgatgaactccgatacacattcctgcaccgtttccttagcatctttcgagatcttcgcgtttgctggtaacgccttcttcat |
341 |
Q |
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| T |
9722756 |
cagttatgaaactgataaactctgatacacactcttgtactgtttcttttgcttcttttgagatctttgcgtttgctggtaaagcctttttcat |
9722663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 175 - 326
Target Start/End: Complemental strand, 38281771 - 38281620
Alignment:
| Q |
175 |
gtcatcgcccaaagtagatcgtcgccgttgatcgtctttcgtttctctctctgacacttatcggaagcttcaccggtgatgaagctgatgaactccgata |
274 |
Q |
| |
|
||||| |||||||| ||||| || || || || || || | ||| ||||||||||||||||| ||||||||||| || ||||| || |||||||| || | |
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| T |
38281771 |
gtcatagcccaaagaagatcatcaccattaattgttttccttttttctctctgacacttatcagaagcttcaccagtaatgaaactaatgaactcagaga |
38281672 |
T |
|
| Q |
275 |
cacattcctgcaccgtttccttagcatctttcgagatcttcgcgtttgctgg |
326 |
Q |
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||||||| || |||||||| || || ||||| ||||| || || |||||||| |
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| T |
38281671 |
cacattcttgaaccgtttcttttgcttcttttgagattttagcatttgctgg |
38281620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 281
Target Start/End: Complemental strand, 39304703 - 39304579
Alignment:
| Q |
157 |
tcttcaaatcctaacgtagtcatcgcccaaagtagatcgtcgccgttgatcgtctttcgtttctctctctgacacttatcggaagcttcaccggtgatga |
256 |
Q |
| |
|
|||||||| |||||||| || || ||||||| | ||| || |||||||| ||||||| ||| ||||| ||||| ||||| || ||||| ||||||| | |
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| T |
39304703 |
tcttcaaagcctaacgttgtaatagcccaaataatatcatcaccgttgattgtctttcttttttctctttgacatttatccgatgcttccccggtgacaa |
39304604 |
T |
|
| Q |
257 |
agctgatgaactccgatacacattc |
281 |
Q |
| |
|
| || ||||||||||| |||||||| |
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| T |
39304603 |
aacttatgaactccgacacacattc |
39304579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 22139867 - 22139811
Alignment:
| Q |
249 |
ggtgatgaagctgatgaactccgatacacattcctgcaccgtttccttagcatcttt |
305 |
Q |
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||||||||||||||||||||| || || |||||||| || ||||||||||||||||| |
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| T |
22139867 |
ggtgatgaagctgatgaactcggagacgcattcctgaacggtttccttagcatcttt |
22139811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 40539257 - 40539201
Alignment:
| Q |
249 |
ggtgatgaagctgatgaactccgatacacattcctgcaccgtttccttagcatcttt |
305 |
Q |
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||||||||||||||||||||| || || |||||||| || ||||||||||||||||| |
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| T |
40539257 |
ggtgatgaagctgatgaactcggagacgcattcctgaacggtttccttagcatcttt |
40539201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 22140036 - 22139960
Alignment:
| Q |
160 |
tcaaatcctaacgtagtcatcgcccaaagtagatcgtcgccgttgatcgtctttcgtttctctctctgacacttatc |
236 |
Q |
| |
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||||| ||||| |||| |||||||||||| | ||| || ||||| |||||||| | |||||||||||||||||||| |
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| T |
22140036 |
tcaaaccctaaagtagccatcgcccaaagcaaatcatcaccgttaatcgtcttcctcttctctctctgacacttatc |
22139960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 40539426 - 40539350
Alignment:
| Q |
160 |
tcaaatcctaacgtagtcatcgcccaaagtagatcgtcgccgttgatcgtctttcgtttctctctctgacacttatc |
236 |
Q |
| |
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||||| ||||| |||| |||||||||||| | ||| || ||||| |||||||| | |||||||||||||||||||| |
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| T |
40539426 |
tcaaaccctaaagtagccatcgcccaaagcaaatcatcaccgttaatcgtcttcctcttctctctctgacacttatc |
40539350 |
T |
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