View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21637_low_17 (Length: 325)
Name: NF21637_low_17
Description: NF21637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21637_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 53637300 - 53637596
Alignment:
| Q |
21 |
ataagatcaattatgacccttaaatcaagaatactaaatggcgagtcattttcagttggtttggttttaataatggattgaatgaaatctgagatggtaa |
120 |
Q |
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| T |
53637300 |
ataagatcaattatgacccttaaatcaagaacactaaatggcgagtcattttcagttggtttggttttaataatggattgaatgaaatctgagatagtaa |
53637399 |
T |
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| Q |
121 |
cctctgctgacaaagttgtaactttgttgcctttcactcctgaagcacaaaaaatgggcttcaagttggtaatttgggattgagattcttcggttaccag |
220 |
Q |
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| T |
53637400 |
cctctgaggacaaagttgtaactttgttgcctttcactcctgaagcacaaaaaatgggcttcaagttggtaatttgggattgagattcttcggttaccag |
53637499 |
T |
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| Q |
221 |
tgtaggcatatttaggctttttcttgagtgcttagtagcttgaaaaggtgatagaaaaggaaagaagcaatgtagaataataattggaatggatgtt |
317 |
Q |
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| T |
53637500 |
tgtaggcatatttaggctttttcttgagtgcttagtagcttgaaaaggtgatagaaaaggaaagaagcaatgtagaataataattggtttggatgtt |
53637596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 53651635 - 53651831
Alignment:
| Q |
21 |
ataagatcaattatgacccttaaatcaagaatactaaatggcgagtcattttcagttggtttggttttaataatggattgaatgaaatctgagatggtaa |
120 |
Q |
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|||||||| |||| ||||||||||||||| | |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||| || || |||| |
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| T |
53651635 |
ataagatcgattacgacccttaaatcaaggacgctaaatggtgagtcattttcagctggtttggttttaataacggattgaatgaaatcagaaatagtaa |
53651734 |
T |
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| Q |
121 |
cctctgctgacaaagttgtaactttgttgcctttcactcctgaagcacaaaaaatgggcttcaagttggtaatttgggattgagattcttcggttac |
217 |
Q |
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| T |
53651735 |
tttctaaggacaaagttgtgagtttcttacctttgactcctgaagcaccaaaaatgagcttcaggttggtaatttgggatagggattcttcggttac |
53651831 |
T |
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