View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21637_low_2 (Length: 540)
Name: NF21637_low_2
Description: NF21637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21637_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 170 - 526
Target Start/End: Original strand, 1330061 - 1330417
Alignment:
| Q |
170 |
ttgaaaggttcattccacatggatggttcttttttctttcccaagaagaccaattcataactcattacaatatgcctagattaacaacattgatttatgc |
269 |
Q |
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| T |
1330061 |
ttgaaaggttcattccacatggatggttcttttttctttcccaagaagaccaattcataactcattacaatatgcctagattaacaacattgatttatgc |
1330160 |
T |
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| Q |
270 |
aagatctgttaaattattgattctatcacttagaacaagaaggtcatgaagtttgtggaactcacatgtgtgaccactaagggagctatctttccaacac |
369 |
Q |
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| T |
1330161 |
aagatctgttaaattattgattctatcacttagaacaagaaggtcatgaagtttgtggaactcacatgtgtgatcactaagggagctatctttccaacac |
1330260 |
T |
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| Q |
370 |
atccacttgcgacagaagataagaaagtattcaaaaagcaaaattctaggacaaagtgttaaagcatgttttcactaacattagatgaaacttgaaaggt |
469 |
Q |
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| T |
1330261 |
atccacttgcgacagaagataagaaagtattcaaaaagcaaaattctaggacaaagtgttaaagcatgttttcactaacattagatgaaacttgaaaggt |
1330360 |
T |
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| Q |
470 |
tacaccctttatcattgcatacctacacatttgctttctcatttgttcatgaaaagt |
526 |
Q |
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| T |
1330361 |
tacaccctttatcattgcatacctacacatttgctttctcatttgttcatgaaaagt |
1330417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 1329900 - 1329951
Alignment:
| Q |
10 |
cggcattcaaacatcgattcactatattatgagaaactagccatttcgcaaa |
61 |
Q |
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| T |
1329900 |
cggcattcaaacatcgattcactatattatgagaaactaaccctttcgcaaa |
1329951 |
T |
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