View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21637_low_20 (Length: 316)
Name: NF21637_low_20
Description: NF21637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21637_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 57 - 306
Target Start/End: Complemental strand, 40614266 - 40614021
Alignment:
| Q |
57 |
aattagaagttagaatgcgactcctcttatcaatatttccagcatcaatcatgcaagaaagaannnnnnnngaagaagggtaaaatgaaatatattaatg |
156 |
Q |
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| T |
40614266 |
aattagaagttagaatgcgactcctcttatcaatatttccagcatcaatcatgcaagaaataattttttt-----aagggtaaaatgaaatatattaatg |
40614172 |
T |
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| Q |
157 |
ctaaatctca-tctctacagcacaaggtgtatcgagaaagaggatnnnnnnnttatataattgtgttacaaaaaccgcaagagcaaaaccaaggaacgaa |
255 |
Q |
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| T |
40614171 |
ctaaatctcactctctaccgcacaaggtgtatcgagaaagaggataaaaaaattatataattttgttacaaaaaccgcaagagcaaaaccaaggaacgaa |
40614072 |
T |
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| Q |
256 |
acaaaatcagcatatgcccacatacatcaaaggattaagccatcacctatg |
306 |
Q |
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| T |
40614071 |
acaaaatcagcatatgcccacatacattaaaggattaagccaccacctatg |
40614021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 57 - 306
Target Start/End: Complemental strand, 40617583 - 40617334
Alignment:
| Q |
57 |
aattagaagttagaatgcgactcctcttatcaatatttccagcatcaatcatgcaagaaagaannnnnnnngaagaagggtaaaatgaaatatattaatg |
156 |
Q |
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| T |
40617583 |
aattagaagttagaatgcgactcctctcatcaatatttccagcatcaatcatgcaagaaaga-ttttttttgaagaagggtaaaatgaaatacattactg |
40617485 |
T |
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| Q |
157 |
ctaaatctca-tctctacagcacaaggtgtatcgagaaagaggatnnnnnnnttatataattgtgttacaaaaaccgcaagagcaaaaccaaggaacgaa |
255 |
Q |
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| T |
40617484 |
ctaaatcgcactctctccaatataaggtgtactgaagaagaggttaaaaaagttatataattgtgttacaaaacccgcaagagcaaaaccaaggagtgaa |
40617385 |
T |
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| Q |
256 |
acaaaatcagcatatgcccacatacatcaaaggattaagccatcacctatg |
306 |
Q |
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| T |
40617384 |
acaaaatcaacatatgcccacacacaacaaaaggttaagccaccatctatg |
40617334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 306
Target Start/End: Complemental strand, 12243807 - 12243713
Alignment:
| Q |
212 |
ataattgtgttacaaaaaccgcaagagcaaaaccaaggaacgaaacaaaatcagcatatgcccacatacatcaaaggattaagccatcacctatg |
306 |
Q |
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| T |
12243807 |
ataaatgtgtttcaaaaaccgcaagaacaaaaccaaggaaagaaacaaagtcagcctatgcccacacacaacaaggagttaagccaccgcctatg |
12243713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 41238349 - 41238405
Alignment:
| Q |
232 |
gcaagagcaaaaccaaggaacgaaacaaaatcagcatatgcccacatacatcaaagg |
288 |
Q |
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| T |
41238349 |
gcaagaacaaaaccaaggaaagaaacaaaatcagtctatgcccgtacacatcaaagg |
41238405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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