View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21637_low_21 (Length: 316)
Name: NF21637_low_21
Description: NF21637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21637_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 25658712 - 25658835
Alignment:
| Q |
2 |
gaataaagataaaaagctcataaaatgacataaaatctttaatgacaatttaagtagctgcaattagaacgaacaaatagatataacctattattttcaa |
101 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| || || ||| |||| ||||||| || ||||||||| |||||||||||||||||||||||| |
|
|
| T |
25658712 |
gaataaagttaaaaagctcataaaatgacatcaaatctctactggtaatctaagcagctgcagttggaacgaacacatagatataacctattattttcaa |
25658811 |
T |
|
| Q |
102 |
ccagaaacctaaacatatattcta |
125 |
Q |
| |
|
||| | |||||||||||||||||| |
|
|
| T |
25658812 |
ccacagacctaaacatatattcta |
25658835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 25659345 - 25659398
Alignment:
| Q |
231 |
ccataaagattagaaagaagacattttgttcagcttcctaaaaaggaattaata |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25659345 |
ccataaagattagaaagaagacattttgttcagcttcctaaaaaggaattaata |
25659398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 25659242 - 25659281
Alignment:
| Q |
129 |
tttactcgatctatcttgtttctcacatgaattgatcaac |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25659242 |
tttactcgatctatcttgtttctcacatgaattgatcaac |
25659281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 25141223 - 25141132
Alignment:
| Q |
13 |
aaaagctcataaaatgacataaaatctttaatgacaatttaagtagctgcaattagaacgaacaaatagatataacctattattttcaacca |
104 |
Q |
| |
|
|||||| |||||||||| || |||||| |||||||||| | | || |||| |||||||||||| | ||||||||| |||||||||||||| |
|
|
| T |
25141223 |
aaaagcccataaaatgaaatcaaatctctaatgacaatctgggcagttgcagttagaacgaacacaaagatataacacattattttcaacca |
25141132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 31177874 - 31177813
Alignment:
| Q |
57 |
agctgcaattagaacgaacaaatagatataacctattattttcaaccagaaacctaaacata |
118 |
Q |
| |
|
||||||| || ||||||||| | ||||||||| || |||||||||||| | ||||||||||| |
|
|
| T |
31177874 |
agctgcagtttgaacgaacatagagatataacataatattttcaaccatagacctaaacata |
31177813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 31198486 - 31198425
Alignment:
| Q |
57 |
agctgcaattagaacgaacaaatagatataacctattattttcaaccagaaacctaaacata |
118 |
Q |
| |
|
||||||| || ||||||||| | ||||||||| || |||||||||||| | ||||||||||| |
|
|
| T |
31198486 |
agctgcagtttgaacgaacatagagatataacataatattttcaaccatagacctaaacata |
31198425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 10991012 - 10990907
Alignment:
| Q |
13 |
aaaagctcataaaatgacataaaatctttaatgacaatttaagtagctgcaattagaacgaacaaatagatataacctattattttcaaccagaaaccta |
112 |
Q |
| |
|
|||||||||| ||||||||| |||||| || ||||||| | || |||| || ||||||||| | ||||||||| |||||||||||||| ||||| |
|
|
| T |
10991012 |
aaaagctcatgaaatgacatcaaatctatactgacaatctggacagttgcagttggaacgaacacagagatataacacattattttcaaccatcgaccta |
10990913 |
T |
|
| Q |
113 |
aacata |
118 |
Q |
| |
|
|||||| |
|
|
| T |
10990912 |
aacata |
10990907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University