View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21637_low_27 (Length: 254)

Name: NF21637_low_27
Description: NF21637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21637_low_27
NF21637_low_27
[»] chr7 (5 HSPs)
chr7 (16-239)||(13794594-13794817)
chr7 (16-239)||(13794291-13794514)
chr7 (16-233)||(13793685-13793902)
chr7 (16-227)||(13793988-13794199)
chr7 (31-239)||(28742334-28742542)
[»] chr2 (5 HSPs)
chr2 (16-239)||(34637088-34637311)
chr2 (62-162)||(29504143-29504243)
chr2 (51-226)||(29055864-29056039)
chr2 (22-176)||(33899545-33899699)
chr2 (16-157)||(29056396-29056539)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 13794594 - 13794817
Alignment:
Q  16 acaaacacatcttctaccatcccatctctcacggaaaatccatgaattgctttacctgatttcaaatcttgtaaatctgagcacgctggcaaaatactag 115  Q
    |||||||||||||||||||| ||||  |||||   ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13794594 acaaacacatcttctaccataccatgcctcaccacaaatccatgaatttctttacctgatttcaaatcttgtaaatctgagcaccctggcaaaatactag 13794693  T
Q  116 acacagtcatcggattcgctttcaccccattccatcccattttgcgaaaaacattaagaccttggtgaggaaatccacaattagcatagcacgcagacaa 215  Q
    ||||||||| ||||||||||||||||  |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || |||||    
T  13794694 acacagtcaacggattcgctttcaccttattcaatcccattttgcgaaaaacattaagaccttgctgaggaaatccacaattaacatagcaggcggacaa 13794793  T
Q  216 cgaggtccaagtaaccacgtctct 239  Q
     ||  ||||||||||||| |||||    
T  13794794 tgaattccaagtaaccacatctct 13794817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 13794291 - 13794514
Alignment:
Q  16 acaaacacatcttctaccatcccatctctcacggaaaatccatgaattgctttacctgatttcaaatcttgtaaatctgagcacgctggcaaaatactag 115  Q
    |||||||||| ||||||||| |||| | |||  | ||||||||||||||||||||||||||||||||| || |||||||||||||| | |||||| | ||    
T  13794291 acaaacacattttctaccattccatgtttcaatgcaaatccatgaattgctttacctgatttcaaatcctgcaaatctgagcacgcagacaaaatgcaag 13794390  T
Q  116 acacagtcatcggattcgctttcaccccattccatcccattttgcgaaaaacattaagaccttggtgaggaaatccacaattagcatagcacgcagacaa 215  Q
    ||||||||| ||||| ||  |||||||||| | || |||||| |||||||||||| ||||| |  |||||||||||||||||  |||||||||  |||||    
T  13794391 acacagtcaccggatccggcttcaccccatccaataccatttcgcgaaaaacattcagacccttctgaggaaatccacaattgacatagcacgaggacaa 13794490  T
Q  216 cgaggtccaagtaaccacgtctct 239  Q
    |||| ||||||||||||| |||||    
T  13794491 cgagttccaagtaaccacatctct 13794514  T

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Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 13793685 - 13793902
Alignment:
Q  16 acaaacacatcttctaccatcccatctctcacggaaaatccatgaattgctttacctgatttcaaatcttgtaaatctgagcacgctggcaaaatactag 115  Q
    ||||||||||||||||||||||||| |||||| | ||||||||||||| |||||||||||||||||||||| ||||||||||| ||  |||||||||||     
T  13793685 acaaacacatcttctaccatcccatgtctcaccgcaaatccatgaattactttacctgatttcaaatcttgcaaatctgagcatgcatgcaaaatactaa 13793784  T
Q  116 acacagtcatcggattcgctttcaccccattccatcccattttgcgaaaaacattaagaccttggtgaggaaatccacaattagcatagcacgcagacaa 215  Q
     || ||||| | ||| || ||| ||||||||| || |||||| |||||||||||| ||||| |  |||||||||||||||||  |||||||||  |||||    
T  13793785 gcatagtcaccagatccggtttaaccccattcaataccatttcgcgaaaaacattcagacccttctgaggaaatccacaattgacatagcacgaggacaa 13793884  T
Q  216 cgaggtccaagtaaccac 233  Q
    |||| |||| || |||||    
T  13793885 cgagttccaggttaccac 13793902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 13793988 - 13794199
Alignment:
Q  16 acaaacacatcttctaccatcccatctctcacggaaaatccatgaattgctttacctgatttcaaatcttgtaaatctgagcacgctggcaaaatactag 115  Q
    |||||||||||||||||||| |||| | |||| | |||||||||||||| ||||||||||||||||||||  || | ||||||||| ||||| || || |    
T  13793988 acaaacacatcttctaccattccatgtttcactgcaaatccatgaattgttttacctgatttcaaatctttcaattgtgagcacgcgggcaagatgctgg 13794087  T
Q  116 acacagtcatcggattcgctttcaccccattccatcccattttgcgaaaaacattaagaccttggtgaggaaatccacaattagcatagcacgcagacaa 215  Q
    ||| || ||| |||| || |||||||||||||  ||||||||  ||||||||||| ||||| |  |||||||||||||||||  ||||||| |  | |||    
T  13794088 acatagccataggatccggtttcaccccattcagtcccatttcacgaaaaacatttagacccttctgaggaaatccacaattgacatagcatgaggccaa 13794187  T
Q  216 cgaggtccaagt 227  Q
    |||| |||||||    
T  13794188 cgagttccaagt 13794199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 239
Target Start/End: Complemental strand, 28742542 - 28742334
Alignment:
Q  31 accatcccatctctcacggaaaatccatgaattgctttacctgatttcaaatcttgtaaatctgagcacgctggcaaaatactagacacagtcatcggat 130  Q
    |||||||||| |||||| | ||| ||||||||| ||||||| |||||||||||||  || || |  || || |||||||| ||||| |||||||||||||    
T  28742542 accatcccatgtctcactgcaaacccatgaatttctttacccgatttcaaatctttcaattccgcacaagcaggcaaaatgctagaaacagtcatcggat 28742443  T
Q  131 tcgctttcaccccattccatcccattttgcgaaaaacattaagaccttggtgaggaaatccacaattagcatagcacgcagacaacgaggtccaagtaac 230  Q
    |||  ||||||||| |||| |||||||  ||||||||||  |  || |   ||||||||||||| ||| |||| ||||  ||||||||||||||| ||||    
T  28742442 tcggcttcaccccactccaccccatttcacgaaaaacatccatgcccttccgaggaaatccacacttaacataacacgacgacaacgaggtccaactaac 28742343  T
Q  231 cacgtctct 239  Q
    ||| |||||    
T  28742342 cacatctct 28742334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 34637088 - 34637311
Alignment:
Q  16 acaaacacatcttctaccatcccatctctcacggaaaatccatgaattgctttacctgatttcaaatcttgtaaatctgagcacgctggcaaaatactag 115  Q
    |||||||||| ||| |||||||| | |||||| | |||||||||||| ||||||||||||||||||||||  ||||| | |||||| ||||| || ||||    
T  34637088 acaaacacattttccaccatcccgtttctcaccgcaaatccatgaatagctttacctgatttcaaatctttcaaatcggcgcacgcaggcaagatgctag 34637187  T
Q  116 acacagtcatcggattcgctttcaccccattccatcccattttgcgaaaaacattaagaccttggtgaggaaatccacaattagcatagcacgcagacaa 215  Q
    |||||||||  |||| |   ||||||||||||||||||||||   |||||||||| ||||| |  ||||||||||||||||   |||||||||  |||||    
T  34637188 acacagtcactggatccagcttcaccccattccatcccatttcatgaaaaacatttagacccttctgaggaaatccacaatcgacatagcacgaggacaa 34637287  T
Q  216 cgaggtccaagtaaccacgtctct 239  Q
    |||||| |||| |||||| |||||    
T  34637288 cgaggttcaagaaaccacatctct 34637311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 162
Target Start/End: Complemental strand, 29504243 - 29504143
Alignment:
Q  62 ttgctttacctgatttcaaatcttgtaaatctgagcacgctggcaaaatactagacacagtcatcggattcgctttcaccccattccatcccattttgcg 161  Q
    |||| |||||||||| ||||||||  ||||| |||||||| ||||||||||||||||||||||||| || |  |||||||||||||||||||||||||||    
T  29504243 ttgcattacctgattgcaaatctttcaaatccgagcacgcaggcaaaatactagacacagtcatcgaatccagtttcaccccattccatcccattttgcg 29504144  T
Q  162 a 162  Q
    |    
T  29504143 a 29504143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 226
Target Start/End: Original strand, 29055864 - 29056039
Alignment:
Q  51 aaatccatgaattgctttacctgatttcaaatcttgtaaatctgagcacgctggcaaaatactagacacagtcatcggattcgctttcaccccattccat 150  Q
    |||| |||||||| |||||||| ||||||||||||| ||||| |||||| | ||||||||||||  || ||||| ||| |||  |||||||||||||  |    
T  29055864 aaattcatgaatttctttacctaatttcaaatcttgcaaatccgagcacacaggcaaaatactaagcatagtcaccgggttcagtttcaccccattctgt 29055963  T
Q  151 cccattttgcgaaaaacattaagaccttggtgaggaaatccacaattagcatagcacgcagacaacgaggtccaag 226  Q
    |||||||    | |||| ||||||||||| |||||||||||||  ||  |||||||| | ||||| ||| ||||||    
T  29055964 cccatttcattacaaaccttaagaccttgctgaggaaatccactgttcacatagcacactgacaaggagttccaag 29056039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 33899699 - 33899545
Alignment:
Q  22 acatcttctaccatcccatctctcacggaaaatccatgaattgctttacctgatttcaaatcttgtaaatctgagcacgctggcaaaatactagacacag 121  Q
    |||| |||||||| ||||  ||||||   |||||||||||||| ||||||||||||  |||| |  ||||| |||||||| | ||| || || |  | ||    
T  33899699 acattttctaccagcccacgtctcaccacaaatccatgaattgttttacctgattttgaatccttcaaatccgagcacgcagacaagatgctcgctatag 33899600  T
Q  122 tcatcggattcgctttcaccccattccatcccattttgcgaaaaacattaagacc 176  Q
    || | ||||| | |||||||| ||||||||||||||||||||||| ||| |||||    
T  33899599 tctttggatttggtttcacccgattccatcccattttgcgaaaaatattcagacc 33899545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 29056396 - 29056539
Alignment:
Q  16 acaaacacatcttctaccat--cccatctctcacggaaaatccatgaattgctttacctgatttcaaatcttgtaaatctgagcacgctggcaaaatact 113  Q
    |||||||||| |||||||||  ||||| ||||||   ||||| ||||||||  |||||||||| ||||||||  ||||| |||||| | ||||  || ||    
T  29056396 acaaacacattttctaccatcccccatgtctcaccacaaatcaatgaattgtcttacctgattgcaaatctttcaaatccgagcacccaggcatgatgct 29056495  T
Q  114 agacacagtcatcggattcgctttcaccccattccatcccattt 157  Q
    ||||||| |||   ||| || |||||| | |||||| |||||||    
T  29056496 agacacaatcacatgatccggtttcactctattccaccccattt 29056539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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