View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21637_low_28 (Length: 250)
Name: NF21637_low_28
Description: NF21637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21637_low_28 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 48606256 - 48606493
Alignment:
| Q |
13 |
aaaatcaggatgaacttgaaacgaaatcgagtaagatccattgctaaaatctttcaccaacggtctagatttccacgattcccccgaaagatcagtctca |
112 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48606256 |
aaaatcaggatgaacttgaagcgaaatcgagtaagatccattgctaaaatctttcaccaacggtctagatttccacgattcccccgaaagatcagtctca |
48606355 |
T |
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| Q |
113 |
aaataatcaccacctaaacatcgagccttccccgaatcatccaatgcttgaaaaacaaattcatgtatatcaccagctgataaatctaccatattcccac |
212 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48606356 |
aaataatcaccacctaaacatcgagccttcctcgaatcatccaatgcttgaaaaacaaattcatgtatatcaccagctgataaatctaccatattcccac |
48606455 |
T |
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| Q |
213 |
catccaagccaggaattgaaatatcaacagccttagaa |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
48606456 |
catccaagccaggaattgaaatatcaacagccttagaa |
48606493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 48611852 - 48612095
Alignment:
| Q |
13 |
aaaatcaggatgaacttgaaacgaaatcgagtaagatccattgctaaaatctttcaccaacggtctagatttccacgattcccccgaaagatcagtctca |
112 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
48611852 |
aaaatcaggatgaacttgaagtgaaatcgagtaagatccattactaaaatctttcaccaacggcctagatttccacgattcccccgaaagactagtctca |
48611951 |
T |
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| Q |
113 |
aaataatcaccacctaaacatcgagccttccccgaatcatccaatgcttgaaaaacaaattcatgtatatcaccagctgataaatctaccatattcccac |
212 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || | || |||||||| |
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| T |
48611952 |
aagtaatcaccacctaaacatcgagacttccccgaatcatccaatgcttgaaaaccaaattcatgtatatcaccagctgataactcaatcaaattcccac |
48612051 |
T |
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| Q |
213 |
c------atccaagccaggaattgaaatatcaacagccttagaa |
250 |
Q |
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| T |
48612052 |
catccaaatccaacccaggaattgaaatctcaacagtcttagaa |
48612095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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