View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21637_low_29 (Length: 249)
Name: NF21637_low_29
Description: NF21637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21637_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 53637623 - 53637839
Alignment:
| Q |
10 |
tatatatacacatgattaaagaggtaagagaagattacaaagacaagggaagatatgacacaggctgtgaaattccgccatcgccacgtgaatcattagc |
109 |
Q |
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| T |
53637623 |
tatatatacacatgattaaagaggtaagagaagattacaaagacaagggaagatatgacacaggctgtgaaattccgccatcgccacgtgaatcattagc |
53637722 |
T |
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| Q |
110 |
gcctggccgcatatattatgttacaataattttttaatactacttgcaccttcaataacatcaagcttgtctaatgaataaatctgactatagaaattta |
209 |
Q |
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| T |
53637723 |
gtctggccgc--atattatgttacaataattttttaatactacttgcaccttcaataacatcaagcttgtctaatgaataaatctgactatagaaattta |
53637820 |
T |
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| Q |
210 |
gttttaactattaaatcaa |
228 |
Q |
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| T |
53637821 |
gttttaactattacatcaa |
53637839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 53652314 - 53652379
Alignment:
| Q |
58 |
gaagatatgacacaggctgtgaaattccgccatcgccacgtgaatcattagcgcctggccgcatat |
123 |
Q |
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| T |
53652314 |
gaagatatcacacaggctgtgaaaatccgccagcgccacgtgaagcatgaccgtttggccgcatat |
53652379 |
T |
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