View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21637_low_3 (Length: 494)
Name: NF21637_low_3
Description: NF21637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21637_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 339 - 445
Target Start/End: Complemental strand, 38279248 - 38279142
Alignment:
| Q |
339 |
ttggctggatcaaaattgagaaatcttagagacaatcaatttagtcccctccactttcaccctaacttataagacatttcacctagattataaacatagt |
438 |
Q |
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| T |
38279248 |
ttggctggatcaaaattgagaaatcttagagacaatcaatttaatcccctccactttcatcataatttataagacatttcacctcgattataaacatagt |
38279149 |
T |
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| Q |
439 |
attatgt |
445 |
Q |
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||||||| |
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| T |
38279148 |
attatgt |
38279142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 309
Target Start/End: Complemental strand, 38274025 - 38273944
Alignment:
| Q |
228 |
tagtgatttatggtttgaaatgtgagttgaatttgatcaagactgtgtaaacacaatttggattttataatccaaaaaacgt |
309 |
Q |
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| T |
38274025 |
tagtgatttataatttggaatgtgggttaaatttgatcataactgtgaaaacacagttcggactttttaatcaaaaaaacgt |
38273944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 38277372 - 38277336
Alignment:
| Q |
59 |
ttggtgttcttgctttagcttccattgttattgtggt |
95 |
Q |
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| T |
38277372 |
ttggtgttcttgctttagcttccgttgttgttgtggt |
38277336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 26574092 - 26574026
Alignment:
| Q |
241 |
tttgaaatgtgagttgaatttgatcaagactgtgtaaacacaatttggattttataatccaaaaaac |
307 |
Q |
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| T |
26574092 |
tttgaaatgtgagttgagtttgatcaagactatgtaaacacaatttggattttataatccaaaaaac |
26574026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 26573895 - 26573813
Alignment:
| Q |
224 |
attttagtgatttatggtttgaaatgtgagttgaatttgatcaagactgtgtaaacacaatttggattttataatccaaaaaa |
306 |
Q |
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||||||||||||||| ||||||||||||| ||||||| || || |||||||||||| | || | ||| ||||||| |||||| |
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| T |
26573895 |
attttagtgatttataatttgaaatgtgagctgaatttaattaaaactgtgtaaacaaagttcgaattatataatctaaaaaa |
26573813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 305
Target Start/End: Complemental strand, 35756398 - 35756369
Alignment:
| Q |
276 |
aaacacaatttggattttataatccaaaaa |
305 |
Q |
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| T |
35756398 |
aaacacaatttggattttataatccaaaaa |
35756369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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