View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21637_low_30 (Length: 239)
Name: NF21637_low_30
Description: NF21637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21637_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 2516140 - 2515935
Alignment:
| Q |
16 |
agaaagcatttgtttttcctatgtattgttatgttgtcaattttttcaaatcctttctagaaagtttagctgtctttataccaccttggtagtcatcttt |
115 |
Q |
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| T |
2516140 |
agaaagcatttgtttttcctatgttttgttatgttgtcaattttttcaaatcttttctagaaagtttagctgtctttataccaccttggtagtcatcttt |
2516041 |
T |
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| Q |
116 |
tttcatatctatgaatatatgatgagactgtgttcctgataatccagggagctgtgtaatcttttatggtgttattgttagagaataaaagcatttactt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2516040 |
tttcatatctatgaatatatgatgagactgtgttcctgataatccagggagctgtgtaatcttttatggtgttattgttagagaataaaagcatttactt |
2515941 |
T |
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| Q |
216 |
cctttt |
221 |
Q |
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|||||| |
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| T |
2515940 |
cctttt |
2515935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 2496567 - 2496368
Alignment:
| Q |
16 |
agaaagcatttgtttttcctatgtattgttatgttgtcaatt-ttttcaaatcctttctagaaagtttagctgtctttataccaccttggtagtcatctt |
114 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||| ||||| |||||| ||||||| |||||| || | ||||||| | |
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| T |
2496567 |
agaaagcatttgcttttcctatgtattgttatgttgtcaatttttttcaaatcttttatagaatgtttagttgtctttgtaccacttttgcagtcatc-t |
2496469 |
T |
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| Q |
115 |
ttttcatatctatgaat-----atatgatgaga-ctgtgttcctgataatccagggagctgtgtaatcttttatggtgttattgttagagaataaaagca |
208 |
Q |
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||||||||| ||||||| ||||||||||| |||||||||||||| | ||||||||||| |||| | ||| ||||||||| |||| |||||||||| |
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| T |
2496468 |
ttttcatatgtatgaatgtatgatatgatgagacctgtgttcctgatagttcagggagctgtataatgtatta--gtgttattgatagaaaataaaagca |
2496371 |
T |
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