View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21637_low_31 (Length: 238)
Name: NF21637_low_31
Description: NF21637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21637_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 32364066 - 32363854
Alignment:
| Q |
8 |
atatattttaaatctaactattaattaagatgaatagccttaaaaagtattacttatgttttaaaaactcgcaaagcttacttggaggaagtgtaccctt |
107 |
Q |
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| T |
32364066 |
atatattttaaatctaactattaattaagatgaatagccttaaaaagtattacttatgtttcaaaaactcgcaaagcttatttggaggaagtgtaccctt |
32363967 |
T |
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| Q |
108 |
catgatgaaaccatcatttaagtcgatcaatgagtgttaacatcctcattggtttaaaactccaacataaacacatgacttgtgagagatgctacaaatt |
207 |
Q |
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| T |
32363966 |
tatgatgaaaccatcatttaagtcgatcaatgagtgttaacatcctcattggtttaaaactccaacataaacacatgacttgtgagagatgctagaaatt |
32363867 |
T |
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| Q |
208 |
tggaagtaacctt |
220 |
Q |
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|||||||| |||| |
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| T |
32363866 |
tggaagtagcctt |
32363854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 52 - 220
Target Start/End: Complemental strand, 32388738 - 32388570
Alignment:
| Q |
52 |
aagtattacttatgttttaaaaactcgcaaagcttacttggaggaagtgtacccttcatgatgaaaccatcatttaagtcgatcaatgagtgttaacatc |
151 |
Q |
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| T |
32388738 |
aagtattacctatattttaaaaactcgcatagcttacttggagaaagtgtacccaacatgatgacaccatcatttaagtcgatcaatgagtgtcaacatc |
32388639 |
T |
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| Q |
152 |
ctcattggtttaaaactccaacataaacacatgacttgtgagagatgctacaaatttggaagtaacctt |
220 |
Q |
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| T |
32388638 |
ctcattagtttaaaactccaacataaacatatgacttgtgagagatgctagaaatttggaagtaacctt |
32388570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 32381918 - 32381845
Alignment:
| Q |
56 |
attacttatgttttaaaaactcgcaaagcttacttggaggaagtgtacccttcatgatgaaaccatcatttaag |
129 |
Q |
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| T |
32381918 |
attacctatgttttaataactagcaaagcttactagaaggaagtgtacccttcatgatgacaccatcatttaag |
32381845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 32380990 - 32380907
Alignment:
| Q |
142 |
tgttaacatcctcattggtttaaaactccaacataaaca----catgacttgtgagagatgctacaaatttggaagtaaccttc |
221 |
Q |
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||||||||||||| || |||||||||||| ||||||||| ||||| ||||||||||||||| |||||| |||||| ||||| |
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| T |
32380990 |
tgttaacatcctcgttagtttaaaactccgacataaacaaactcatgagttgtgagagatgctagaaattttgaagtagccttc |
32380907 |
T |
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