View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21637_low_4 (Length: 482)
Name: NF21637_low_4
Description: NF21637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21637_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 404
Target Start/End: Complemental strand, 36399967 - 36399577
Alignment:
| Q |
17 |
actaagtttgagagtttattcaaaataaaaagttgaactttctccacggcatatgaaccttcttttcttcaagaagctaaatgggtttttctaagtagtg |
116 |
Q |
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| T |
36399967 |
actaagtttgagagtttattcaaaataaaaagttgaactttctccacggcatatgaaccttcttttcttcaagaagctaaatgggtttttctaagtagtg |
36399868 |
T |
|
| Q |
117 |
gtctgattcattcatgaatagtactcttttattttctttattgagtaatcaatgaataatcaataaattca-tattataaattttacttttctctttcga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
36399867 |
gtctgattcattcatgaatagtactcttttattttctttattgagtaatcaatgaatagtcaataaattcattattataaattttacttttctctttcga |
36399768 |
T |
|
| Q |
216 |
tggtatttgtgctttctatattga--ttttttgttttgaagaagtgttgttatcttatctatgttgatggtagcaaattcttacaaatttcacatacttc |
313 |
Q |
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|||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36399767 |
tggtatttgtgctttctatattgattttttttttttttaagaagtgttgttatcttatctatgttgatggtagcaaattcttacaaatttcacatacttc |
36399668 |
T |
|
| Q |
314 |
tattttttagttggatgcgatgtttatttgtagggtttgaacatttcattacttattcaaattgcttcagtgtttctcaatttacccactg |
404 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36399667 |
tattttttagttggatgctatgtttatttgtagggtttgaacatttcattacttattcaaattgcttcagtttttctcaatttacccactg |
36399577 |
T |
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