View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21638_low_1 (Length: 390)
Name: NF21638_low_1
Description: NF21638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21638_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 15 - 371
Target Start/End: Original strand, 19890430 - 19890786
Alignment:
| Q |
15 |
atcaagctcggcgtgtcgaggtaattgaacaaattcaaagtgcatgtcatgtggggggattttttcaggtaattaatcatgatattcccattgatgtctt |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19890430 |
atcaagctcagcgtgtcgaggtaattgaacaaattcaaagtgcatgtcatgtgggtggattttttcaggtaattaatcatgatattcccattgatgtctt |
19890529 |
T |
|
| Q |
115 |
ggatgaaatgattcatggaatccgtagttttcatgaacaagatgttgatgtaagaaaagagttttacactcgtgatttaaagaaaaaagttatgtatttc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19890530 |
ggatgaaatgattcatggaatccgtagttttcatgaacaagatgttgatgtaagaaaagagttttacactcgtgatttaaagaaaaaagttatgtatttc |
19890629 |
T |
|
| Q |
215 |
tccaatggaaccttgtttagtggccaagctgctaattggagagatacaattggttttgctgttgctcctcatccattcaaaccaaatgaactaccatcca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19890630 |
tccaatggaaccttgtttagtggccaagctgctaattggagagatacaattggttttgctgttgctcctcatccattcaaaccaaatgaactaccatcca |
19890729 |
T |
|
| Q |
315 |
tatgcaggtaattatgttcttgcacaacaatttgtaatgagttttcgttgtagttct |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19890730 |
tatgcaggtaattatgttcttgcacaacaatttctaatgagttttcgttgtagttct |
19890786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 29462822 - 29463129
Alignment:
| Q |
19 |
agctcggcgtgtcgaggtaattgaacaaattcaaagtgcatgtcatgtggggggattttttcaggtaattaatcatgatattcccattgatgtcttggat |
118 |
Q |
| |
|
||||| |||||| ||||||||||| ||||||| ||||||||| |||| | |||||||||||||||| ||||||||||| ||||| ||| |||||||||| |
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|
| T |
29462822 |
agctcagcgtgtagaggtaattgaccaaattcgaagtgcatgccatgagtggggattttttcaggtgattaatcatgaaattcctattattgtcttggat |
29462921 |
T |
|
| Q |
119 |
gaaatgattcatggaatccgtagttttcatgaacaagatgttgatgtaagaaaagagttttacactcgtgatttaaagaaaaaagttatgtatttctcca |
218 |
Q |
| |
|
||||||||| |||||||| |||| |||||||||||||||| |||||||||||||||||||| || || |||||||||||||||||| ||||| ||| | |
|
|
| T |
29462922 |
gaaatgattgatggaatctgtaggtttcatgaacaagatgccgatgtaagaaaagagttttatacacgggatttaaagaaaaaagtttcgtattactcta |
29463021 |
T |
|
| Q |
219 |
atggaaccttgtttagtggccaagctgctaattggagagatacaattggttttgctgttgctcctcatccattcaaaccaaatgaactaccatccatatg |
318 |
Q |
| |
|
||| | |||||||| ||| |||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||| ||| ||||| | ||| ||||| |
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|
| T |
29463022 |
atgtacgcttgtttaatggacaaggtgctaattggagagatacatttggttttgctattgctcctgatccattcaatccagatgaagtgccacaaatatg |
29463121 |
T |
|
| Q |
319 |
caggtaat |
326 |
Q |
| |
|
|||||||| |
|
|
| T |
29463122 |
caggtaat |
29463129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 32 - 326
Target Start/End: Original strand, 19844590 - 19844884
Alignment:
| Q |
32 |
gaggtaattgaacaaattcaaagtgcatgtcatgtggggggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatgattcatg |
131 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| | |||||||||||||||| ||||||||||| |||||||| |||| |||||||| |||||||||| |
|
|
| T |
19844590 |
gaggtaattggcaaaattcgaagtgcatgtcatgagtggggattttttcaggtgattaatcatgaaattcccatcaatgtattggatgagatgattcatg |
19844689 |
T |
|
| Q |
132 |
gaatccgtagttttcatgaacaagatgttgatgtaagaaaagagttttacactcgtgatttaaagaaaaaagttatgtatttctccaatggaaccttgtt |
231 |
Q |
| |
|
||||||||| |||||||||||||||||| |||| |||||||||||||| || |||||||||| | |||||||| |||||||||||||| |||||| || |
|
|
| T |
19844690 |
gaatccgtaactttcatgaacaagatgttaatgttagaaaagagttttatacgcgtgatttaagggaaaaagttgtgtatttctccaatacaaccttatt |
19844789 |
T |
|
| Q |
232 |
tagtggccaagctgctaattggagagatacaattggttttgctgttgctcctcatccattcaaaccaaatgaactaccatccatatgcaggtaat |
326 |
Q |
| |
|
|| | | ||||||||| |||||||||||||| |||| || | |||||||||| |||||||||||||| | ||| ||||| | ||||||||||||| |
|
|
| T |
19844790 |
tactagtcaagctgctgattggagagatacagttggattcgttgttgctcctgatccattcaaaccagaagaaataccaccaatatgcaggtaat |
19844884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 324
Target Start/End: Complemental strand, 19877593 - 19877338
Alignment:
| Q |
69 |
ggggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatgattcatggaatccgtagttttcatgaacaagatgttgatgtaag |
168 |
Q |
| |
|
||||||||||||| || ||||||||||| || ||||| ||||||||||||||||||| | | ||| ||| |||||||||||||| | | || || |
|
|
| T |
19877593 |
ggggattttttcaagtgattaatcatgaaatccccatctatgtcttggatgaaatgatcgaagaaattcgttcatttcatgaacaagaagcttctgagag |
19877494 |
T |
|
| Q |
169 |
aaaagagttttacactcgtgatttaaagaaaaaagttatgtatttctccaatggaaccttgtttagtggccaagctgctaattggagagatacaattggt |
268 |
Q |
| |
|
|| || || ||| | | | ||||| |||||||| |||| ||||| |||||||| |||| | || ||||| ||| |||| ||||||||||||||||||| |
|
|
| T |
19877493 |
aagagtgtattataatagagattttaagaaaaatgttaggtattactccaatgcaaccctattcagtggacaacctgcaaattggagagatacaattgca |
19877394 |
T |
|
| Q |
269 |
tttgctgttgctcctcatccattcaaaccaaatgaactaccatccatatgcaggta |
324 |
Q |
| |
|
| | ||| |||||| ||| ||||||||| | || ||||| ||||||||||||| |
|
|
| T |
19877393 |
tattctgctgctccagttcccttcaaaccagaggatctacctcccatatgcaggta |
19877338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 26 - 326
Target Start/End: Complemental strand, 49465352 - 49465052
Alignment:
| Q |
26 |
cgtgtcgaggtaattgaacaaattcaaagtgcatgtcatgtggggggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatga |
125 |
Q |
| |
|
||||| || |||||| | ||||||| ||||||||| |||| | |||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
49465352 |
cgtgtagatgtaattcatcaaattcgaagtgcatgccatgagtggggattttttcaggtgattaatcatgaaattcccattaccgtcttggatgaaatga |
49465253 |
T |
|
| Q |
126 |
ttcatggaatccgtagttttcatgaacaagatgttgatgtaagaaaagagttttacactcgtgatttaaagaaaaaagttatgtatttctccaatggaac |
225 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||| | |
|
|
| T |
49465252 |
ttgatggaatccgtagctttcatgaacaagatgctgatgtaagaaaagagttttacacgcgtgatttaaagaaaaaagttatgtattattctaatgtaca |
49465153 |
T |
|
| Q |
226 |
cttgtttagtggccaagctgctaattggagagatacaattggttttgctgttgctcctcatccattcaaaccaaatgaactaccatccatatgcaggtaa |
325 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| | ||| | |||||||||||| |
|
|
| T |
49465152 |
cttgtttagtgggcaagctgctaattggagagatacatttggttttgctgttgctcctcatccattcaaacccgaggaagtgccaccaatatgcaggtaa |
49465053 |
T |
|
| Q |
326 |
t |
326 |
Q |
| |
|
| |
|
|
| T |
49465052 |
t |
49465052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 69 - 182
Target Start/End: Original strand, 8349216 - 8349329
Alignment:
| Q |
69 |
ggggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatgattcatggaatccgtagttttcatgaacaagatgttgatgtaag |
168 |
Q |
| |
|
||||||||||| | || |||||||||| ||||||||| |||| |||||||||| ||| ||||||| ||||| ||||||||||||||| || ||||| |
|
|
| T |
8349216 |
ggggattttttaaagtgattaatcatggaattcccattaatgtattggatgaaacaattgatggaattcgtaggtttcatgaacaagatcccgaagtaag |
8349315 |
T |
|
| Q |
169 |
aaaagagttttaca |
182 |
Q |
| |
|
|||| | ||||||| |
|
|
| T |
8349316 |
aaaacaattttaca |
8349329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 41238475 - 41238564
Alignment:
| Q |
69 |
ggggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatgattcatggaatccgtagttttcatgaacaagatg |
158 |
Q |
| |
|
|||||||||| || || || ||||||| |||||| || |||| |||||||| ||||| ||||||| |||| |||||||||||||||| |
|
|
| T |
41238475 |
ggggatttttccaagtgatcaatcatggtattccacttcatgttttggatgagatgatcaatggaatttgtagatttcatgaacaagatg |
41238564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 5e-78; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 1093086 - 1093393
Alignment:
| Q |
19 |
agctcggcgtgtcgaggtaattgaacaaattcaaagtgcatgtcatgtggggggattttttcaggtaattaatcatgatattcccattgatgtcttggat |
118 |
Q |
| |
|
|||||| ||||| |||||||||| ||||||||||||||||| |||| | |||||||||||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
1093086 |
agctcgacgtgtagaggtaattggccaaattcaaagtgcatgccatgagtggggattttttcagataattaatcatgaaattcccattaatgtcttggat |
1093185 |
T |
|
| Q |
119 |
gaaatgattcatggaatccgtagttttcatgaacaagatgttgatgtaagaaaagagttttacactcgtgatttaaagaaaaaagttatgtatttctcca |
218 |
Q |
| |
|
||||||||| ||||||| ||| ||||| |||||||||| | ||||||||||||| ||||| || || ||||| || |||||||||||||||| ||| | |
|
|
| T |
1093186 |
gaaatgattgatggaattagtaagtttcacgaacaagatgctaatgtaagaaaagatttttatacgcgggatttgaacaaaaaagttatgtattactcta |
1093285 |
T |
|
| Q |
219 |
atggaaccttgtttagtggccaagctgctaattggagagatacaattggttttgctgttgctcctcatccattcaaaccaaatgaactaccatccatatg |
318 |
Q |
| |
|
||| | |||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| | ||| | ||||| |
|
|
| T |
1093286 |
atgtactcttgtttagtggaaaacctgctaattggagagatacatttggttttgctattgctcctcattcattcaaaccagatgaagtgccaccaatatg |
1093385 |
T |
|
| Q |
319 |
caggtaat |
326 |
Q |
| |
|
|||||||| |
|
|
| T |
1093386 |
caggtaat |
1093393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 69 - 157
Target Start/End: Original strand, 26168459 - 26168547
Alignment:
| Q |
69 |
ggggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatgattcatggaatccgtagttttcatgaacaagat |
157 |
Q |
| |
|
||||||||||||| || |||||||||| |||||||||||||| |||||||||| ||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
26168459 |
ggggattttttcaagtgattaatcatggaattcccattgatgtattggatgaaacaattgatggaattcgtaggtttcatgaacaagat |
26168547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 26396020 - 26396157
Alignment:
| Q |
19 |
agctcggcgtgtcgaggtaattgaacaaattcaaagtgcatgtcatgtggggggattttttcaggtaattaatcatgatattcccattgatgtcttggat |
118 |
Q |
| |
|
|||||| ||| | ||||||||| ||||||| || ||||||| | | | ||||||||||||| || ||||||||||| ||||||||| ||| |||||| |
|
|
| T |
26396020 |
agctcgtcgtattgaggtaattagtcaaattcgaactgcatgtaaggagtggggattttttcaagtgattaatcatgaaattcccatttgtgtattggat |
26396119 |
T |
|
| Q |
119 |
gaaatgattcatggaatccgtagttttcatgaacaaga |
156 |
Q |
| |
|
|||||| || ||||| | ||||| |||||||||||||| |
|
|
| T |
26396120 |
gaaatgcttgatggatttcgtaggtttcatgaacaaga |
26396157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 25224922 - 25224810
Alignment:
| Q |
70 |
gggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatgattcatggaatccgtagttttcatgaacaagatgttgatgtaaga |
169 |
Q |
| |
|
|||||||||||| || |||||||||| ||||| ||| |||| |||||||||| ||| ||||||| ||||| ||||||||||||||| ||| |||||| |
|
|
| T |
25224922 |
gggattttttcaagtgattaatcatggaattccaattaatgtattggatgaaacaattaatggaattcgtaggtttcatgaacaagatcctgaagtaaga |
25224823 |
T |
|
| Q |
170 |
aaagagttttaca |
182 |
Q |
| |
|
||| | ||||||| |
|
|
| T |
25224822 |
aaacaattttaca |
25224810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 33769168 - 33769073
Alignment:
| Q |
69 |
ggggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatgattcatggaatccgtagttttcatgaacaagatgttgatg |
164 |
Q |
| |
|
||||||||||||| || |||||||||| |||||| || ||| |||||||| |||||| |||||||||||| |||||||||||||||| ||||| |
|
|
| T |
33769168 |
ggggattttttcaagtgattaatcatggtattccggttattgttttggatgagatgattagtggaatccgtaggtttcatgaacaagatgctgatg |
33769073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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