View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21638_low_2 (Length: 318)
Name: NF21638_low_2
Description: NF21638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21638_low_2 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 318
Target Start/End: Complemental strand, 7934946 - 7934640
Alignment:
| Q |
13 |
caaaggggagggtatcagtgtggacaattatgc-aaggccattgcatttatataatggatgtacataagacacaacaatgaaaaataagataatgatgaa |
111 |
Q |
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| T |
7934946 |
caaaggggagggtatcagtgtggacaattatgtgaaggccattgcatttatataatggatgtacataagacacaacaatgaaaaataagataatgatgaa |
7934847 |
T |
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| Q |
112 |
acatttgtttgtaatggagataaacattgttcccaacaaagcaaactatgcaaaacattggccttaacttttggttaaatattaattcatataatcatca |
211 |
Q |
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| T |
7934846 |
acatttgtttgtaatggagacaaacattgttcccaacaaagcaaactatgcaaaacattggccttaacttttggttaaatattaattcatataatcatcc |
7934747 |
T |
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| Q |
212 |
taggtagtcactaaatggtatcttatgaccaattattattttttaatctaaaatctgaatcttatcgagaaacaaagaactcgtctatggtacatattgt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7934746 |
taggtagtcactaaatggtatcttatgaccaattattattttttaatctaaaatctgaatcttatcgagaaacaaagaactcgtctatggcacatattgt |
7934647 |
T |
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| Q |
312 |
aacaatg |
318 |
Q |
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||||||| |
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| T |
7934646 |
aacaatg |
7934640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 7934640 - 7934600
Alignment:
| Q |
278 |
gagaaacaaagaactcgtctatggtacatattgtaacaatg |
318 |
Q |
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| T |
7934640 |
gagaaacaaagaactcgtctatggcacatattgtaacaatg |
7934600 |
T |
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