View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21638_low_3 (Length: 240)

Name: NF21638_low_3
Description: NF21638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21638_low_3
NF21638_low_3
[»] chr3 (4 HSPs)
chr3 (23-240)||(3175506-3175723)
chr3 (23-229)||(3175697-3175906)
chr3 (54-199)||(3175916-3176061)
chr3 (117-165)||(3176040-3176088)
[»] chr1 (4 HSPs)
chr1 (23-229)||(24540895-24541101)
chr1 (54-172)||(24541135-24541259)
chr1 (117-173)||(24541230-24541286)
chr1 (24-79)||(24540865-24540920)
[»] chr5 (4 HSPs)
chr5 (23-226)||(20964155-20964358)
chr5 (54-199)||(20963994-20964145)
chr5 (117-173)||(20963967-20964023)
chr5 (23-79)||(20964335-20964391)
[»] chr2 (5 HSPs)
chr2 (30-229)||(41524827-41525026)
chr2 (23-153)||(41524559-41524689)
chr2 (23-153)||(41524729-41524853)
chr2 (54-229)||(41525007-41525189)
chr2 (23-85)||(41524458-41524519)
[»] chr4 (1 HSPs)
chr4 (56-115)||(16591879-16591938)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 3175723 - 3175506
Alignment:
Q  23 ctctcctgctcatgcccctattaagactccggttcacactcctttacatcctcctcaccctgccaaacctccaacacatcacgaccaccaacatcactca 122  Q
    ||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3175723 ctctcctgctcatgcccctattaagccttcgtttcacactcctttacatcctcctcaccctgccaaacctccaacacatcaccaccaccaacatcactca 3175624  T
Q  123 ccttcccctgccccttcccatgttcacactcctttacatcctcgtcaccctaaaaaaccacccacccattatcatcaccactctcctgctcatgctccca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3175623 ccttcccctgccccttcccatgttcacactcctttacatcctcgtcaccctaaaaaaccacccacccattatcatcaccactctcctgctcatgccccca 3175524  T
Q  223 ttaagcccccaactcacc 240  Q
    ||||||||||||||||||    
T  3175523 ttaagcccccaactcacc 3175506  T

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Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 229
Target Start/End: Complemental strand, 3175906 - 3175697
Alignment:
Q  23 ctctcctgctcatgcccctattaagactccggttcacactcctttacatcctcctcaccctgccaaacctccaacacatcacgaccaccaacatcactca 122  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  3175906 ctctcctgctcatgcccctattaaaactccggttcacactcctttacatcctcctcaccctgccaaacctccaactcatcaccaccaccaacatcactca 3175807  T
Q  123 ccttcccctgccccttcccatgttcacactcctttacatcctcgtcaccctaaaaaaccacccacc---cattatcatcaccactctcctgctcatgctc 219  Q
    || ||||| ||||||||||||||||||||||||||||||| ||||||||||  |||||| || |||   ||| ||||||| ||||||||||||||||| |    
T  3175806 ccatcccccgccccttcccatgttcacactcctttacatcatcgtcaccctgcaaaacccccaacccatcatcatcatcatcactctcctgctcatgccc 3175707  T
Q  220 ccattaagcc 229  Q
    | ||||||||    
T  3175706 ctattaagcc 3175697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 199
Target Start/End: Complemental strand, 3176061 - 3175916
Alignment:
Q  54 gttcacactcctttacatcctcctcaccctgccaaacctccaacacatcacgaccaccaacatcactcaccttcccctgccccttcccatgttcacactc 153  Q
    ||||||||||||||||||||||| |||||||| ||||| || || ||||||  |||||||||||||||||| |||| ||| ||||| |||||||||||||    
T  3176061 gttcacactcctttacatcctccccaccctgctaaacccccgacccatcaccgccaccaacatcactcaccatcccttgctccttctcatgttcacactc 3175962  T
Q  154 ctttacatcctcgtcaccctaaaaaaccacccacccattatcatca 199  Q
    |||||||||||||||| |||  |||||| || |||||| |||||||    
T  3175961 ctttacatcctcgtcatcctgcaaaacctccaacccatcatcatca 3175916  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 3176088 - 3176040
Alignment:
Q  117 cactcaccttcccctgccccttcccatgttcacactcctttacatcctc 165  Q
    |||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  3176088 cactcaccatcacatgcaccttctcatgttcacactcctttacatcctc 3176040  T

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Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 23 - 229
Target Start/End: Complemental strand, 24541101 - 24540895
Alignment:
Q  23 ctctcctgctcatgcccctattaagactccggttcacactcctttacatcctcctcaccctgccaaacctccaacacatcacgaccaccaacatcactca 122  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||    
T  24541101 ctctcctgctcattcccctattaagtctccggttcacactcctttacatcctcctcaccctgccaaacctccaacccatcaccgccaccaacatcactca 24541002  T
Q  123 ccttcccctgccccttcccatgttcacactcctttacatcctcgtcaccctaaaaaaccacccacccattatcatcaccactctcctgctcatgctccca 222  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| || |||||||| |||||||| |    
T  24541001 ccatcccctgccccttcccatgttcacactcctttacatcctcgtcaccctgcaaaaccccccacccattatcatcatcattctcctgcccatgctccta 24540902  T
Q  223 ttaagcc 229  Q
    |||||||    
T  24540901 ttaagcc 24540895  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 172
Target Start/End: Complemental strand, 24541259 - 24541135
Alignment:
Q  54 gttcacactcctttacatcctcctcaccctgccaaacctccaacacatcacgaccaccaacatca------ctcaccttcccctgccccttcccatgttc 147  Q
    |||||||||||||||||||||||||||||||| ||||| || || |||||| |||||||||||||      |||||| |||||| | |||||||||||||    
T  24541259 gttcacactcctttacatcctcctcaccctgctaaacccccgacccatcaccaccaccaacatcaacatcactcaccatcccctacgccttcccatgttc 24541160  T
Q  148 acactcctttacatcctcgtcaccc 172  Q
    || ||||||||||||||||||||||    
T  24541159 accctcctttacatcctcgtcaccc 24541135  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 24541286 - 24541230
Alignment:
Q  117 cactcaccttcccctgccccttcccatgttcacactcctttacatcctcgtcaccct 173  Q
    |||||||| |||| ||| ||||| ||||||||||||||||||||||||| |||||||    
T  24541286 cactcaccatcccatgcaccttctcatgttcacactcctttacatcctcctcaccct 24541230  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 24540920 - 24540865
Alignment:
Q  24 tctcctgctcatgcccctattaagactccggttcacactcctttacatcctcctca 79  Q
    |||||||| ||||| ||||||||| ||||||||||||  ||||||| |||||||||    
T  24540920 tctcctgcccatgctcctattaagcctccggttcacaaacctttacttcctcctca 24540865  T

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Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 20964155 - 20964358
Alignment:
Q  23 ctctcctgctcatgcccctattaagactccggttcacactcctttacatcctcctcaccctgccaaacctccaacacatcacgaccaccaacatcactca 122  Q
    |||||| || ||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||| |||||| |||||||||||||||||    
T  20964155 ctctcccgcacatgcccctattaagcctccggttcacactcctttacatcatcctcatcctgccaaacctccaacccatcaccaccaccaacatcactca 20964254  T
Q  123 ccttcccctgccccttcccatgttcacactcctttacatcctcgtcaccctaaaaaaccacccacccattatcatcaccactctcctgctcatgctccca 222  Q
    || ||||| |||||||| ||| |||||||||||||||||||||||||||||  |||||| ||||||||||||||||| ||||||||||||||||| || |    
T  20964255 ccatcccccgccccttcacattttcacactcctttacatcctcgtcaccctgcaaaaccccccacccattatcatcatcactctcctgctcatgccccta 20964354  T
Q  223 ttaa 226  Q
    ||||    
T  20964355 ttaa 20964358  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 54 - 199
Target Start/End: Original strand, 20963994 - 20964145
Alignment:
Q  54 gttcacactcctttacatcctcctcaccctgccaaacctccaacacatcacgaccacca------acatcactcaccttcccctgccccttcccatgttc 147  Q
    |||||||||||||||||||||||||||||||| ||||| || || |||||| |||||||      |||||| ||||| |||||| | |||||||||||||    
T  20963994 gttcacactcctttacatcctcctcaccctgctaaacccccgacccatcaccaccaccagcatcaacatcattcaccatcccctactccttcccatgttc 20964093  T
Q  148 acactcctttacatcctcgtcaccctaaaaaaccacccacccattatcatca 199  Q
    |||||||| |||||||||||||||||  |||||| || |||||| |||||||    
T  20964094 acactcctatacatcctcgtcaccctgcaaaacccccaacccatcatcatca 20964145  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 20963967 - 20964023
Alignment:
Q  117 cactcaccttcccctgccccttcccatgttcacactcctttacatcctcgtcaccct 173  Q
    |||||||| |||| ||| ||||| ||||||||||||||||||||||||| |||||||    
T  20963967 cactcaccatcccatgcaccttctcatgttcacactcctttacatcctcctcaccct 20964023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 20964335 - 20964391
Alignment:
Q  23 ctctcctgctcatgcccctattaagactccggttcacactcctttacatcctcctca 79  Q
    ||||||||||||||||||||||||  |||| |||||||| ||||||| ||| |||||    
T  20964335 ctctcctgctcatgcccctattaaacctccagttcacacacctttacttccccctca 20964391  T

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Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 30 - 229
Target Start/End: Complemental strand, 41525026 - 41524827
Alignment:
Q  30 gctcatgcccctattaagactccggttcacactcctttacatcctcctcaccctgccaaacctccaacacatcacgaccaccaacatcactcaccttccc 129  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||| | ||| | ||||||||||||| |||||| |||||||||| |||||||| ||||    
T  41525026 gctcatgcccctattaagcctctggttcacactcctttacatcctctttaccataccaaacctccaacccatcaccaccaccaacaccactcaccatccc 41524927  T
Q  130 ctgccccttcccatgttcacactcctttacatcctcgtcaccctaaaaaaccacccacccattatcatcaccactctcctgctcatgctcccattaagcc 229  Q
    |||| |||||||||||||| ||||||||| ||||||||||||||  |||||| || |||||| ||| ||| |||||||| |||||||| || ||||||||    
T  41524926 ctgctccttcccatgttcatactcctttatatcctcgtcaccctgcaaaacccccaacccatcatcgtcatcactctccagctcatgcccctattaagcc 41524827  T

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Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 41524689 - 41524559
Alignment:
Q  23 ctctcctgctcatgcccctattaagactccggttcacactcctttacatcctcctcaccctgccaaacctccaacacatcacgaccaccaacatcactca 122  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |||||||||| ||||||    
T  41524689 ctctccagctcatgcccctattaagcctccggttcacactcctttacatcctccttaccctaccaaacctccaacccatcaccaccaccaacaccactca 41524590  T
Q  123 ccttcccctgccccttcccatgttcacactc 153  Q
    || |||||||| |||||||||||||| ||||    
T  41524589 ccatcccctgctccttcccatgttcatactc 41524559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 41524853 - 41524729
Alignment:
Q  23 ctctcctgctcatgcccctattaagactccggttcacactcctttacatcctcctcaccctgccaaacctccaacacatcacgaccaccaacatcactca 122  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |||||      ||||||    
T  41524853 ctctccagctcatgcccctattaagcctccggttcacactcctttacatcctccttaccctaccaaacctccaacccatcaccaccac------cactca 41524760  T
Q  123 ccttcccctgccccttcccatgttcacactc 153  Q
    || |||||||| |||||||||||||| ||||    
T  41524759 ccatcccctgctccttcccatgttcatactc 41524729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 229
Target Start/End: Complemental strand, 41525189 - 41525007
Alignment:
Q  54 gttcacactcctttacatcctcctcaccctgccaaacctccaacacatcacgaccacca------acatcactcaccttcccctgccccttcccatgttc 147  Q
    |||| ||||||| | |||||||||||| | | |||||||||||| |||||| |||| ||      |||||| ||||| |||||| ||||||| |||||||    
T  41525189 gttcccactcctgttcatcctcctcacacagtcaaacctccaacccatcaccaccatcagcatcaacatcattcaccatcccctaccccttcgcatgttc 41525090  T
Q  148 acactcctttacatcctcgtcaccctaaaaaaccaccc-acccattatcatcaccactctcctgctcatgctcccattaagcc 229  Q
    |||||||||||||| |||||  ||||  |||||| ||| |||||| ||| ||| |||||||  |||||||| || ||||||||    
T  41525089 acactcctttacattctcgtttccctgcaaaaccccccaacccatcatcgtcatcactctctagctcatgcccctattaagcc 41525007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 41524519 - 41524458
Alignment:
Q  23 ctctcctgctcatgcccctattaagactccggttcacactcctttacatcctcctcaccctgc 85  Q
    ||||||||||||   |||||||||| ||||| ||||||| ||||||| |||||||||||||||    
T  41524519 ctctcctgctcaaatccctattaagtctccg-ttcacacacctttacttcctcctcaccctgc 41524458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 16591879 - 16591938
Alignment:
Q  56 tcacactcctttacatcctcctcaccctgccaaacctccaacacatcacgaccaccaaca 115  Q
    ||||||||||||||| ||| |||||||||| ||||||||||| | |||| ||||||||||    
T  16591879 tcacactcctttacacccttctcaccctgctaaacctccaacccgtcaccaccaccaaca 16591938  T

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