View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2163_high_1 (Length: 644)

Name: NF2163_high_1
Description: NF2163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2163_high_1
NF2163_high_1
[»] chr4 (2 HSPs)
chr4 (1-428)||(48532415-48532840)
chr4 (585-628)||(48532997-48533040)
[»] chr5 (2 HSPs)
chr5 (1-428)||(17049571-17049995)
chr5 (585-628)||(17050152-17050195)
[»] scaffold0430 (2 HSPs)
scaffold0430 (1-428)||(252-676)
scaffold0430 (585-628)||(52-95)
[»] chr8 (2 HSPs)
chr8 (1-171)||(39376927-39377097)
chr8 (585-628)||(39376432-39376475)
[»] chr2 (1 HSPs)
chr2 (8-117)||(39534163-39534272)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 48532415 - 48532840
Alignment:
Q  1 aaggacagcacaaaataaataatcaaggacaggacaagtaaccacttttttgtccaccactttagtgggggacaactttttgtccagcggattactaacc 100  Q
    ||||||| ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48532415 aaggacaacacaaaataaataatcaaggactc-acaagtaaccacttttttgtccaccactttagtgggggacaactttttgtccagcggattactaacc 48532513  T
Q  101 caaaaagacgtttttatcctttggatcttaggctttctcgctatctcacttcttcacaacactgttcacgtccttcctgctaacttagactgcggctgct 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48532514 caaaaagacgtttttatcctttggatcttaggttttctcgctatctcacttcttcacaacattgttcacgtccttcctgctaacttagactgcggctgct 48532613  T
Q  201 tctctatttgtcaggtaacaatttcgatgctttttctttcttctcacttctcacgtcatactcataccctgctacttctcttttacacatgccactgctt 300  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  48532614 tctctatttgtcaggtaacaatttcgatgcttttttcttcgtctcacttctcacgtcatactcataccctgctacttctcttttacacatgctactgctt 48532713  T
Q  301 tctttgtttaataannnnnnnnnnngccaatgtttgtttactcttactttttcattcacttttgtcttatgtgtattgtgtgttccttcaatagagaatc 400  Q
    ||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48532714 tctttgtttaataa-tattttttttgccaatgtttgtttactcttactttttcattcacttttgtcttatgtttattgtgtgttccttcaatagagaatc 48532812  T
Q  401 acgtatttgttaaaattcaaaagccacc 428  Q
    |||||||||||||| |||||||||||||    
T  48532813 acgtatttgttaaagttcaaaagccacc 48532840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 585 - 628
Target Start/End: Original strand, 48532997 - 48533040
Alignment:
Q  585 gtagttgaaatggatgatgaacatgtttttcattatcttctttt 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  48532997 gtagttgaaatggatgatgaacatgtttttcattatcttctttt 48533040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 17049571 - 17049995
Alignment:
Q  1 aaggacagcacaaaataaataatcaaggacaggacaagtaaccacttttttgtccaccactttagtgggggacaactttttgtccagcggattactaacc 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17049571 aaggacagcacaaaataaataatcaaggacaagacaagtaaccacttttttgtccaccactttagttggggacaactttttgtccagcggattactaacc 17049670  T
Q  101 caaaaagacgtttttatcctttggatcttaggctttctcgctatctcacttcttcacaacactgttcacgtccttcctgctaacttagactgcggctgct 200  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||| ||||||||||||| || |||||||||||||    
T  17049671 caaaaagacgtttttatcctttggatcttaggttttctcgctgtctcacttcttcacaaaactgttcacatccttcctgctaaatt-gactgcggctgct 17049769  T
Q  201 tctctatttgtcaggtaacaatttcgatgctttttctttcttctcacttctcacgtcatactcataccctgctacttctcttttacacatgccactgctt 300  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17049770 tctctatttgtcaggtaacaatttcgatgcttttttcttcgtctcacttctcacgtcatactcataccctgctacttctcttttacacatgctactgctt 17049869  T
Q  301 tctttgtttaataannnnnnnnnnngccaatgtttgtttactcttactttttcattcacttttgtcttatgtgtattgtgtgttccttcaatagagaatc 400  Q
    ||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17049870 tctttgtttaataa--tatttttttgccaatgtttgtttactcttactttttcattcacttttgtcttatgtgtattgtgcgttccttcaatagagaatc 17049967  T
Q  401 acgtatttgttaaaattcaaaagccacc 428  Q
    |||||||||||||| |||||||||||||    
T  17049968 acgtatttgttaaagttcaaaagccacc 17049995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 585 - 628
Target Start/End: Original strand, 17050152 - 17050195
Alignment:
Q  585 gtagttgaaatggatgatgaacatgtttttcattatcttctttt 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  17050152 gtagttgaaatggatgatgaacatgtttttcattatcttctttt 17050195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 676 - 252
Alignment:
Q  1 aaggacagcacaaaataaataatcaaggacaggacaagtaaccacttttttgtccaccactttagtgggggacaactttttgtccagcggattactaacc 100  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  676 aaggacagcacaaaataaataatcaaggatgggacaagtaaccacttttttgtccaccactttagttggggacaactttttgtccagcggattactaacc 577  T
Q  101 caaaaagacgtttttatcctttggatcttaggctttctcgctatctcacttcttcacaacactgttcacgtccttcctgctaacttagactgcggctgct 200  Q
    |||||||||||||||||||||||||||||||| ||||||| | ||| |||||||||||| |||||||||||| |||||||||| || ||||||||| |||    
T  576 caaaaagacgtttttatcctttggatcttaggttttctcgttgtctgacttcttcacaaaactgttcacgtctttcctgctaaatt-gactgcggcagct 478  T
Q  201 tctctatttgtcaggtaacaatttcgatgctttttctttcttctcacttctcacgtcatactcataccctgctacttctcttttacacatgccactgctt 300  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  477 tctctatttgtcaggtaacaatttcgatgcttttttcttcgtctcacttctcacgtaatactcataccctgttacttctcttttacacatgctactgctt 378  T
Q  301 tctttgtttaataannnnnnnnnnngccaatgtttgtttactcttactttttcattcacttttgtcttatgtgtattgtgtgttccttcaatagagaatc 400  Q
    ||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  377 tctttgtttaataa--tatttttttgccaatgtttgtttactcttactttttcattcacttttgtcttatgtttattgtgtgttccttcaatagagaatc 280  T
Q  401 acgtatttgttaaaattcaaaagccacc 428  Q
    |||||||||||||| |||||||||||||    
T  279 acgtatttgttaaagttcaaaagccacc 252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 585 - 628
Target Start/End: Complemental strand, 95 - 52
Alignment:
Q  585 gtagttgaaatggatgatgaacatgtttttcattatcttctttt 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  95 gtagttgaaatggatgatgaacatgtttttcattatcttctttt 52  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 39377097 - 39376927
Alignment:
Q  1 aaggacagcacaaaataaataatcaaggacaggacaagtaaccacttttttgtccaccactttagtgggggacaactttttgtccagcggattactaacc 100  Q
    ||||||| |||||||||||||| ||||||| ||| ||||| || |||||||||||||||||||||| |||||||||||||  |||||| |||||||||      
T  39377097 aaggacaacacaaaataaataaccaaggactggataagtagccgcttttttgtccaccactttagttggggacaacttttaatccagcagattactaaat 39376998  T
Q  101 caaaaagacgtttttatcctttggatcttaggctttctcgctatctcacttcttcacaacactgttcacgt 171  Q
     ||||| ||||||||||||||| |||  || | |||||| ||  |||||||  ||| || |||||||||||    
T  39376997 taaaaatacgtttttatcctttagataatatgttttctcacttcctcactttgtcataatactgttcacgt 39376927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 585 - 628
Target Start/End: Complemental strand, 39376475 - 39376432
Alignment:
Q  585 gtagttgaaatggatgatgaacatgtttttcattatcttctttt 628  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  39376475 gtagttgtaatggatgatgaacatgtttttcattatcttctttt 39376432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 39534163 - 39534272
Alignment:
Q  8 gcacaaaataaataatcaaggacaggacaagtaaccacttttttgtccaccactttagtgggggacaactttttgtccagcggattactaacccaaaaag 107  Q
    ||||||||||||||| ||| ||| ||||||||| || |||||||||||||||||||||| ||||||||||||||||||| || ||||||||   |||||     
T  39534163 gcacaaaataaataaccaaagacgggacaagtagccgcttttttgtccaccactttagttggggacaactttttgtccaacgaattactaaattaaaaat 39534262  T
Q  108 acgtttttat 117  Q
    ||||||||||    
T  39534263 acgtttttat 39534272  T

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