View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2163_high_16 (Length: 248)
Name: NF2163_high_16
Description: NF2163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2163_high_16 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 42245589 - 42245359
Alignment:
| Q |
18 |
atatgtactttaatttctaataatattataaacggtgtttctggaaatgattaaaaatttatgaagaacccttgtgcaattggatggaatatcccagaaa |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42245589 |
atatgtaccttaatttctaataatattataaacggtgtttctggaaatgattaaaaatttatgaagaacccttgtgcaattggatggaatatcccataaa |
42245490 |
T |
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| Q |
118 |
ataattcagcgtattaaatttcacttgaattatttgatttgctggttgatagaaaatagccatgcattcttatacttaaaatgttactaaaggggtaata |
217 |
Q |
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| T |
42245489 |
gtaattcagcgtattaaatttcacctcaattatttgatttactggttgatagaaaatagccatgcattcttatacttaaaatgttactaaaggggtaata |
42245390 |
T |
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| Q |
218 |
tattttttgttcaagtaactgtaatagtaat |
248 |
Q |
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| T |
42245389 |
tattttttgttcaagtaactgcaatagtaat |
42245359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 14163192 - 14162959
Alignment:
| Q |
18 |
atatgtactttaatttctaataatattataaacggtgtttctggaaatgattaaaaatttatgaagaacccttgtgcaattggatggaatatcccagaaa |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14163192 |
atatgtaccttaatttctaataatattataaacggtgtttctggaaatgattaaaaatttatgaagaacccttgtgcaattggatggaatatcccagaaa |
14163093 |
T |
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| Q |
118 |
ataattcagcgtattaaatttcacttgaattatttgatttgctggttgatagaaaatagccatgcattcttatacttaaaatgttactaa---aggggta |
214 |
Q |
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|||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14163092 |
ataattcagcgtattaaatttcacctcaattatttgatttactggttgatagaaaatagccatgcattcttatacttaaaatgttactaaattaggggta |
14162993 |
T |
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| Q |
215 |
atatattttttgttcaagtaactgtaatagtaat |
248 |
Q |
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| T |
14162992 |
atatattttttgttcaagtaactgcaatagtaat |
14162959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 13800495 - 13800262
Alignment:
| Q |
18 |
atatgtactttaatttctaataatattataaacggtgtttctggaaatgattaaaaatttatgaagaacccttgtgcaattggatggaatatcccagaaa |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13800495 |
atatgtaccttaatttctaataatattataaacggtgtttctggaaatgattaaaaatttatgaagaacccttgtgcaattggatggaatatcccagaaa |
13800396 |
T |
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| Q |
118 |
ataattcagcgtattaaatttcacttgaattatttgatttgctggttgatagaaaatagccatgcattcttatacttaaaatgttactaa---aggggta |
214 |
Q |
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|||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13800395 |
ataattcagcgtattaaatttcacctcaattatttgatttactggttgatagaaaatagccatgcattcttatacttaaaatgttactaaattaggggta |
13800296 |
T |
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| Q |
215 |
atatattttttgttcaagtaactgtaatagtaat |
248 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
13800295 |
atatattttttgttcaagtaactgcaatagtaat |
13800262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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