View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2163_high_18 (Length: 240)
Name: NF2163_high_18
Description: NF2163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2163_high_18 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 39000606 - 39000362
Alignment:
| Q |
1 |
catagggatggtatctattgaaagattgagtggaatgagtgataatgaagatagtggcaagtgggtcctccaacaccaatactatgagtggaggaaatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39000606 |
catagggatggtatctattgaaagattgagtggaatgagtgataatgaagatagtggcaagtgggtcctccaacaccaatactatgagtggaggaaatta |
39000507 |
T |
|
| Q |
101 |
tgcactaaatacggaagctgcattatcaagcaaag-----caaaacaccaaagaaagaagtgtaaatagtaatttttgtgagtccttgtcatttagtcca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39000506 |
tgcactaaatacggaagctgcattatcaagcaaagcaaagcaaaacacgaaagaaagaagtgtaaatagtaatttttgtgagttcttgtcatttagtcca |
39000407 |
T |
|
| Q |
196 |
taaatatacgaaaattacaaaaacatacatcaaaatttctcattt |
240 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39000406 |
tgaatatacgaaaattacaaaaacatacattgaaatttctcattt |
39000362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University