View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2163_high_19 (Length: 239)
Name: NF2163_high_19
Description: NF2163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2163_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 48663010 - 48663230
Alignment:
| Q |
1 |
cagcatgtcacaatgttgcctacatgtgatgtgatcaaattaatggacactatggtctttgataataattgaaaagagacatttagttcttatacatgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48663010 |
cagcatgtcacaatgttgcctacatgtgatgtgatcaaattaatggacactatggtctttgataataattgaaaagagacatttagttcttatacatgat |
48663109 |
T |
|
| Q |
101 |
ttctaaaacaagtccttatacatgattggaaacacaggctctgatggtgccttcattatcaagacagctttcaaagccattaggatttctcaacacgaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48663110 |
ttctaaaacaagtccttatacatgattggaaacacaggctctgatggtgccttcattatcaagacagctttcaaagccattaggatttctcaacacgaag |
48663209 |
T |
|
| Q |
201 |
ttagttgattacccccacaac |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
48663210 |
ttagttgattacccccacaac |
48663230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University