View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2163_high_20 (Length: 227)
Name: NF2163_high_20
Description: NF2163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2163_high_20 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr3 (5 HSPs) |
| |
|
| [»] chr1 (7 HSPs) |
| |
|
| [»] scaffold0259 (1 HSPs) |
| | |
|
| [»] scaffold0072 (1 HSPs) |
| | |
|
| [»] scaffold0205 (2 HSPs) |
| | |
|
| [»] scaffold0062 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 14162637 - 14162864
Alignment:
| Q |
1 |
aacactaattattgactcatcacaagccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttggtctactatcttctcact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14162637 |
aacactaattattgactcatcacaagccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttagtctactatcttctcact |
14162736 |
T |
|
| Q |
101 |
taatcactatcggtgtaatttctacctacgactctcctagtcctagatatgaaattccctactcaattcctcttgctcacaatcacagtgattccctaca |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14162737 |
taatcactaccggtgtaatttctacctacgactctcctagtgctagatatgaaattccctactcaattcctcttactcacaatcacagtgattccctaca |
14162836 |
T |
|
| Q |
201 |
taaaaa-ccttggtctactatcttctca |
227 |
Q |
| |
|
|||||| ||||||||||||||| ||||| |
|
|
| T |
14162837 |
taaaaacccttggtctactatcatctca |
14162864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 24482353 - 24482468
Alignment:
| Q |
22 |
acaagccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaac---ccttggtctactatcttctcacttaatcactatcggtgtaa |
118 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||||||| |||||||||| |||| | |||||||| |||||||||||||||||| ||| || |
|
|
| T |
24482353 |
acaagtcaagaaggaaattcactatagtagtatcaattcgcagcatacataaaaactttctccagtctactagcttctcacttaatcactactcgtgcaa |
24482452 |
T |
|
| Q |
119 |
tttctacctacgactc |
134 |
Q |
| |
|
|||||| ||| ||||| |
|
|
| T |
24482453 |
tttctatctaagactc |
24482468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 14162833 - 14162869
Alignment:
| Q |
67 |
tacatagaaacccttggtctactatcttctcacttaa |
103 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
14162833 |
tacataaaaacccttggtctactatcatctcacttaa |
14162869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 42245037 - 42245264
Alignment:
| Q |
1 |
aacactaattattgactcatcacaagccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttggtctactatcttctcact |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42245037 |
aacactaattattgactcatcacaatccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtctactatcttctcact |
42245136 |
T |
|
| Q |
101 |
taatcactatcggtgtaatttctacctacgactctcctagtcctagatatgaaattccctactcaattcctcttgctcacaatcacagtgattccctaca |
200 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42245137 |
taatcactaccagtgtaatttctacctacgactctcctagtcctagatatgaaattccctactcaattcctcttactcacaatcacagtgattccctaca |
42245236 |
T |
|
| Q |
201 |
taaaaa-ccttggtctactatcttctca |
227 |
Q |
| |
|
|||||| ||||| ||||||||| ||||| |
|
|
| T |
42245237 |
taaaaacccttgatctactatcatctca |
42245264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 15962308 - 15962475
Alignment:
| Q |
23 |
caagccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactatcggtgtaatttc |
122 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||||||| |||||||||||||||| | |||||||||| |
|
|
| T |
15962308 |
caagctaggaaggaaattcactatagtagtatcaatttgaagcatacataaaaaccctcggtctactac--tctcacttaatcactacctgtgtaatttc |
15962405 |
T |
|
| Q |
123 |
tacctacgactctcctagtcctagatatgaaattccctactcaattcctcttgctcacaatcacagtgat |
192 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || || |||||| |||||||| |||||||| ||||||| |
|
|
| T |
15962406 |
tacctaagactctcctagtcctagatatgagatcccttactcacttcctcttaatcacaatcccagtgat |
15962475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 152
Target Start/End: Complemental strand, 8147663 - 8147530
Alignment:
| Q |
23 |
caagccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttg----gtctactatcttctcacttaatcactatcggtgtaa |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||||||| | ||| | | | |||||| |||||||||||||||||| | |||||| |
|
|
| T |
8147663 |
caagccaggaaggaaattcactataataatatcaattcgaagcatacaaaaaaaactatcaccagcctactaacttctcacttaatcactacccgtgtaa |
8147564 |
T |
|
| Q |
119 |
tttctacctacgactctcctagtcctagatatga |
152 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
8147563 |
tttctacctaagactctcctagtcctagatatga |
8147530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 20962184 - 20962135
Alignment:
| Q |
23 |
caagccaggaaggaaattcactatagtaatatcaattcaaagcatacata |
72 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||||||| ||||||||||| |
|
|
| T |
20962184 |
caagtcaggaaggaaagccactatagtagtatcaattcgaagcatacata |
20962135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 20976047 - 20975979
Alignment:
| Q |
85 |
ctactatcttctcacttaatcactatcggtgtaatttctacctacgactctc-ctagtcctagatatga |
152 |
Q |
| |
|
|||||| |||||||||||||||||| | ||| ||||||||||| ||||||| ||||||| | |||||| |
|
|
| T |
20976047 |
ctactaacttctcacttaatcactacccgtggtatttctacctaagactctcactagtccaaaatatga |
20975979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 13799940 - 13800167
Alignment:
| Q |
1 |
aacactaattattgactcatcacaagccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttggtctactatcttctcact |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13799940 |
aacactaattattgactcatcacaagtcaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttagtctactatcttctcact |
13800039 |
T |
|
| Q |
101 |
taatcactatcggtgtaatttctacctacgactctcctagtcctagatatgaaattccctactcaattcctcttgctcacaatcacagtgattccctaca |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13800040 |
taatcactaacggtgtaatttctacctacgactctcctagtgctagatatgaaatttcctactcaattcctcttactcacaatcacagtgattccctaca |
13800139 |
T |
|
| Q |
201 |
ta-aaaaccttggtctactatcttctca |
227 |
Q |
| |
|
|| ||| ||||||||||||||| ||||| |
|
|
| T |
13800140 |
tataaacccttggtctactatcatctca |
13800167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 51110391 - 51110519
Alignment:
| Q |
23 |
caagccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactatcggtgtaatttc |
122 |
Q |
| |
|
||||||| |||| |||||||||| |||| |||||||| |||||||||||| ||||||| ||||||| | |||||||||||||||||| | ||| |||||| |
|
|
| T |
51110391 |
caagccaagaagaaaattcacta-agtagtatcaatttaaagcatacataaaaaccctcggtctac-aacttctcacttaatcactacctgtgcaatttc |
51110488 |
T |
|
| Q |
123 |
tacctacgactct-cctagtcctagatatga |
152 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| |
|
|
| T |
51110489 |
tacctaaaactctccctagtcctagatatga |
51110519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 50057557 - 50057690
Alignment:
| Q |
23 |
caagccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaaccctt----ggtctactatcttctcacttaatcactatcggtgtaa |
118 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| ||||||||||| ||| | || |||||| ||||||||||||||||| || ||| || |
|
|
| T |
50057557 |
caagtcaggaaggaaatccactatagtaatatcaattcgaagcatacata-aaagctttcaccaacctactaacttctcacttaatcactgtccgtggaa |
50057655 |
T |
|
| Q |
119 |
tttctacctacgactctc-ctagtcctagatatga |
152 |
Q |
| |
|
||| |||||| ||||||| ||||||||| |||||| |
|
|
| T |
50057656 |
tttttacctaagactctcactagtcctaaatatga |
50057690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 24549315 - 24549392
Alignment:
| Q |
27 |
ccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatca |
106 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||| ||| || ||||||| | ||||||||||||||| |
|
|
| T |
24549315 |
ccaggaaggaaattcacta-agtagtatcaattcaaagcatacataaaaattctcggtctac-agcttctcacttaatca |
24549392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 19748708 - 19748599
Alignment:
| Q |
29 |
aggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttg----gtctactatcttctcacttaatcactatcggtgtaatttcta |
124 |
Q |
| |
|
||||| ||||||||||||| || ||||||||| ||||||||||| ||| | || | |||||| |||||||||||||||||| | ||| |||||||| |
|
|
| T |
19748708 |
aggaatgaaattcactataatagtatcaattcgaagcatacata-aaagctttcaccagcctactaacttctcacttaatcactagccgtgcaatttcta |
19748610 |
T |
|
| Q |
125 |
cctacgactct |
135 |
Q |
| |
|
|||| |||||| |
|
|
| T |
19748609 |
cctaagactct |
19748599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 49086714 - 49086673
Alignment:
| Q |
23 |
caagccaggaaggaaattcactatagtaatatcaattcaaag |
64 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
49086714 |
caagccaggaaagaaattcactatagtagtatcaattcaaag |
49086673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 13800136 - 13800172
Alignment:
| Q |
67 |
tacatagaaacccttggtctactatcttctcacttaa |
103 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
13800136 |
tacatataaacccttggtctactatcatctcacttaa |
13800172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 26895635 - 26895804
Alignment:
| Q |
23 |
caagccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactatcggtgtaatttc |
122 |
Q |
| |
|
|||||||| |||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
26895635 |
caagccagaaaggaaattcacaatagtagtatcaattcaaagcatacataataaccctcggtctactatcttctcacttaatcactactcgtgaaatttc |
26895734 |
T |
|
| Q |
123 |
tacctacgactctcctagtcctagatatgaaattccctactcaattcctcttgctcacaatcacagtgat |
192 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||| ||||||| | ||||| || ||| |||| ||||||| |
|
|
| T |
26895735 |
tacctaagactctcctagtcctagatatcaaatcccctactaacttccttttaatcaaaatcccagtgat |
26895804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 28 - 192
Target Start/End: Original strand, 32668693 - 32668857
Alignment:
| Q |
28 |
caggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactatcggtgtaatttctacct |
127 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||||| ||| ||||||| ||||| | ||||||||| |||||||||||||||||| | ||||||||||||||| |
|
|
| T |
32668693 |
caggaaggaaatttactatggtagtatcaattcgaagaatacataaaaaccatcggtctactagcttctcacttaatcactacccgtgtaatttctacct |
32668792 |
T |
|
| Q |
128 |
acgactctcctagtcctagatatgaaattccctactcaattcctcttgctcacaatcacagtgat |
192 |
Q |
| |
|
| ||||||||||||| |||| |||| |||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
32668793 |
aagactctcctagtcatagaaatgagattccctactcacttcctcttaatcacaatcccagtgat |
32668857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 28 - 152
Target Start/End: Original strand, 12464208 - 12464332
Alignment:
| Q |
28 |
caggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactatcggtgtaatttctacct |
127 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| |||||||| ||| | ||||||||||| |||||||||||||||||| | ||| ||||||||||| |
|
|
| T |
12464208 |
caggaaggaaattcactaaagtagtatcaattcaaaacatacataaaaatctttggtctactagcttctcacttaatcactacccgtgcaatttctacct |
12464307 |
T |
|
| Q |
128 |
acgactctcctagtcctagatatga |
152 |
Q |
| |
|
| ||||||||||||||| ||||||| |
|
|
| T |
12464308 |
atgactctcctagtcctggatatga |
12464332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 13730504 - 13730349
Alignment:
| Q |
29 |
aggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactatcggtgtaatttctaccta |
128 |
Q |
| |
|
||||||||||||||||||||| |||||| || ||||||||||| ||||| ||||| || |||||||||||||| || | || ||||||||||||| |
|
|
| T |
13730504 |
aggaaggaaattcactatagtggtatcaactcgaagcatacataaaaaccgccagtctaatagattctcacttaatcattacccgtctaatttctaccta |
13730405 |
T |
|
| Q |
129 |
cgactctcctagtcctagatatgaaattccctactcaattcctcttgctcacaatc |
184 |
Q |
| |
|
| | ||||||||||||||||||| || ||||||||| || ||||| |||||||| |
|
|
| T |
13730404 |
aggcactcctagtcctagatatgagatcccctactcactttctcttaatcacaatc |
13730349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 13553390 - 13553488
Alignment:
| Q |
26 |
gccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactatcggtgtaatttcta |
124 |
Q |
| |
|
|||||||||||||||||||||| || ||| | || ||||||||||| ||||| | ||||||||| |||| || ||||||||| | |||||||||||| |
|
|
| T |
13553390 |
gccaggaaggaaattcactataatagtattattttgaagcatacataaaaaccatcggtctactaacttcgtacctaatcactacctgtgtaatttcta |
13553488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 21671884 - 21671834
Alignment:
| Q |
102 |
aatcactatcggtgtaatttctacctacgactctcctagtcctagatatga |
152 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
21671884 |
aatcactatccgtgtaatttctacctaagactctcatagtcctagatatga |
21671834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 21679300 - 21679250
Alignment:
| Q |
102 |
aatcactatcggtgtaatttctacctacgactctcctagtcctagatatga |
152 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
21679300 |
aatcactatccgtgtaatttctacctaagactctcatagtcctagatatga |
21679250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 163
Target Start/End: Original strand, 13876009 - 13876148
Alignment:
| Q |
23 |
caagccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactatcggtgtaatttc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||||| |||||||||||||||||| || |||||| |
|
|
| T |
13876009 |
caagccaggaaggaaattcactatagtagtatcaattcaaagaatacata-aaaccattggtctactagcttctcacttaatcactacttatgcaatttc |
13876107 |
T |
|
| Q |
123 |
tacctacgactctcctagtcctagatatgaaattccctact |
163 |
Q |
| |
|
|||||| ||||| | ||||||||||||||| || ||||||| |
|
|
| T |
13876108 |
tacctaagactcacgtagtcctagatatgagatcccctact |
13876148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 17871626 - 17871522
Alignment:
| Q |
23 |
caagccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactatcggtgtaatttc |
122 |
Q |
| |
|
|||| |||||||||||||||||| |||| ||||||||||||| ||||||| ||| ||| ||||||||| |||||||| ||||||||| | ||| |||||| |
|
|
| T |
17871626 |
caagtcaggaaggaaattcacta-agtagtatcaattcaaagtatacataaaaatcctcggtctactagcttctcacctaatcactacctgtgcaatttc |
17871528 |
T |
|
| Q |
123 |
taccta |
128 |
Q |
| |
|
|||||| |
|
|
| T |
17871527 |
taccta |
17871522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 13959021 - 13959146
Alignment:
| Q |
23 |
caagccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactatcggtgtaatttc |
122 |
Q |
| |
|
|||||||||||||||||||| || |||| |||||| |||||||||||||| ||| | | | ||||| |||||||||||||||||| | || |||||| |
|
|
| T |
13959021 |
caagccaggaaggaaattcatta-agtagtatcaaatcaaagcatacataaaaatcgtcgatctacgg-cttctcacttaatcactacccatgcaatttc |
13959118 |
T |
|
| Q |
123 |
tacctacgactct-cctagtcctagata |
149 |
Q |
| |
|
|||||| |||||| |||||||||||||| |
|
|
| T |
13959119 |
tacctaagactctccctagtcctagata |
13959146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 19564871 - 19564957
Alignment:
| Q |
23 |
caagccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcacta |
109 |
Q |
| |
|
||||||| ||||||||| ||||||| || ||||| || |||||| |||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
19564871 |
caagccaagaaggaaatccactataatagtatcagtttgaagcatgcataaaaacccttggtctactagcttctcacctaatcacta |
19564957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 33 - 152
Target Start/End: Complemental strand, 21546914 - 21546795
Alignment:
| Q |
33 |
aggaaattcactatagtaatatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactatcggtgtaatttctacctacgac |
132 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||| | ||| |||||||||||| ||| |
|
|
| T |
21546914 |
aggaaattcactaaagtagtatcaattcaaagcaaacataaaaacccttggtctactagtttgtcacttaatcactacccgtgcaatttctacctatgac |
21546815 |
T |
|
| Q |
133 |
tctcctagtcctagatatga |
152 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
21546814 |
tctcctagtcctagatatga |
21546795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 10260248 - 10260120
Alignment:
| Q |
27 |
ccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttg----gtctactatcttctcacttaatcactatcggtgtaatttc |
122 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||||||| ||| | || | |||||| |||||||||||||||||| | |||||||||| |
|
|
| T |
10260248 |
ccaggaaggaaattcactctagtagtatcaatttgaagcatacata-aaagctttcaccagcctactaacttctcacttaatcactacccgtgtaatttc |
10260150 |
T |
|
| Q |
123 |
tacctacgactctcctagtcctagatatga |
152 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| |
|
|
| T |
10260149 |
tacctaagactctcctagtcatagatatga |
10260120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 15003456 - 15003324
Alignment:
| Q |
24 |
aagccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttg---gtctactatcttctcacttaatcactatcggtgtaatt |
120 |
Q |
| |
|
|||||||||| |||||| ||||||||| ||||||||| ||||||||||| || | | |||||||| ||||||||||||||||| | ||| || | |
|
|
| T |
15003456 |
aagccaggaatgaaatttactatagtagtatcaattcgaagcatacataaaagctatcaccagtctactaatttctcacttaatcactacccgtgcaact |
15003357 |
T |
|
| Q |
121 |
tctacctacgactctc-ctagtcctagatatga |
152 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||| |
|
|
| T |
15003356 |
tctacctaagactctcactagtcctagatatga |
15003324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 20854 - 20728
Alignment:
| Q |
23 |
caagccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactatcggtgtaatttc |
122 |
Q |
| |
|
|||| |||||||||||||||| | |||| ||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||| ||| |||||| |
|
|
| T |
20854 |
caagtcaggaaggaaattcacca-agtagtatcaattcaaagcaaacataaaaacccttggtctactagcttatcacttaatcactatcagtgcaatttc |
20756 |
T |
|
| Q |
123 |
tacctacgactctcctagtcctagatatg |
151 |
Q |
| |
|
|| ||| ||||||| |||| ||||||||| |
|
|
| T |
20755 |
ta-ctatgactctcgtagttctagatatg |
20728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 15116828 - 15116956
Alignment:
| Q |
23 |
caagccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactatcggtgtaatttc |
122 |
Q |
| |
|
|||| |||||||||||||||||| |||| |||||||||||| |||||||| ||||||| ||||||| | |||||||||||||||| | | ||| |||||| |
|
|
| T |
15116828 |
caagtcaggaaggaaattcacta-agtattatcaattcaaatcatacataaaaaccctcggtctac-aacttctcacttaatcaccacccgtgcaatttc |
15116925 |
T |
|
| Q |
123 |
tacctacgactct-cctagtcctagatatga |
152 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| |
|
|
| T |
15116926 |
tacctaagactctccctagtcctagatatga |
15116956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 19663715 - 19663776
Alignment:
| Q |
92 |
cttctcacttaatcactatcggtgtaatttctacctacgactctc-ctagtcctagatatga |
152 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
19663715 |
cttctcacttaatcactacccgtgtaatttctacctaagactctcactattcctagatatga |
19663776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 17099690 - 17099629
Alignment:
| Q |
92 |
cttctcacttaatcactatcggtgtaatttctacctacgactctc-ctagtcctagatatga |
152 |
Q |
| |
|
|||||||||||||||| | | ||| |||||||||||| ||||||| ||||| |||||||||| |
|
|
| T |
17099690 |
cttctcacttaatcaccacccgtgcaatttctacctaagactctcactagttctagatatga |
17099629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 23 - 152
Target Start/End: Complemental strand, 20378348 - 20378220
Alignment:
| Q |
23 |
caagccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactatcggtgtaatttc |
122 |
Q |
| |
|
|||||||||||| |||| ||||| |||| |||||||||||||| |||||| ||||||| | | ||| | |||||||||||||||||| | ||| |||||| |
|
|
| T |
20378348 |
caagccaggaagaaaatgcacta-agtagtatcaattcaaagcgtacatacaaaccctcgatttac-agcttctcacttaatcactacccgtgcaatttc |
20378251 |
T |
|
| Q |
123 |
tacctacgactctc-ctagtcctagatatga |
152 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| |
|
|
| T |
20378250 |
tacctaagactctctctagtcctagatatga |
20378220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 30947370 - 30947486
Alignment:
| Q |
23 |
caagccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaaccctt----ggtctactatcttctcacttaatcactatcggtgtaa |
118 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||| ||||||||||| ||| || | |||||| ||||||||||||||||| | |||||| |
|
|
| T |
30947370 |
caagtcaggaaggaaattcactatggtaatatcaattcgaagcatacata-aaagttttcaccagcctactaacttctcacttaatcactgcccgtgtaa |
30947468 |
T |
|
| Q |
119 |
tttctacctacgactctc |
136 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
30947469 |
tttctacctaagactctc |
30947486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 18585 - 18717
Alignment:
| Q |
23 |
caagccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttggtc----tactatcttctcacttaatcactatcggtgtaa |
118 |
Q |
| |
|
||||||| ||||||||| |||||||||| ||||||||| ||||||||||| ||| | || | ||||| |||||||||||||||||| | ||| | |
|
|
| T |
18585 |
caagccatgaaggaaatccactatagtagtatcaattcgaagcatacata-aaatctttcaccaacctactaacttctcacttaatcactacccgtggta |
18683 |
T |
|
| Q |
119 |
tttctacctacgactctcctagtcctagatatga |
152 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| |
|
|
| T |
18684 |
tttctacctacgactctcatagtcctaaatatga |
18717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 10099 - 10160
Alignment:
| Q |
92 |
cttctcacttaatcactatcggtgtaatttctacctacgactctc-ctagtcctagatatga |
152 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||| ||||||| |||||||||||||||| |
|
|
| T |
10099 |
cttctcacttaatcactacctgtgtaatttctatctaagactctcactagtcctagatatga |
10160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 10009 - 10049
Alignment:
| Q |
24 |
aagccaggaaggaaattcactatagtaatatcaattcaaag |
64 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
10009 |
aagccaggaaggaaattcactataatagtatcaattcaaag |
10049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 152
Target Start/End: Complemental strand, 2201 - 2069
Alignment:
| Q |
23 |
caagccaggaaggaaattcactatagtaatatcaattcaaagcatacatagaaacccttg----gtctactatcttctcacttaatcactatcggtgtaa |
118 |
Q |
| |
|
||||||||||| ||||| || |||| || ||||||||| ||||||||||| ||| | || | |||||| |||||||||||||||||| | ||| | |
|
|
| T |
2201 |
caagccaggaaagaaatccattatactagtatcaattcgaagcatacata-aaagctttcaccagcctactaacttctcacttaatcactacctgtggta |
2103 |
T |
|
| Q |
119 |
tttctacctacgactctcctagtcctagatatga |
152 |
Q |
| |
|
|||||||||| |||||||||| ||||| |||||| |
|
|
| T |
2102 |
tttctacctaagactctcctaatcctaaatatga |
2069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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