View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2163_high_8 (Length: 312)
Name: NF2163_high_8
Description: NF2163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2163_high_8 |
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| [»] scaffold0341 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 6521982 - 6522279
Alignment:
| Q |
1 |
ataaccaaaccatatatggtctttgtcaatgcacacctgatttgtataaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6521982 |
ataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattg |
6522081 |
T |
|
| Q |
101 |
ttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaaccaacgccatcagattcaccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6522082 |
ttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaaccaacgccatcagattcaccc |
6522181 |
T |
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| Q |
201 |
tcgccatcaccggtgcctgtgccagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtatttatggtggtttttg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6522182 |
tcgccatcaccggtgcctgtgccagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtatttatggtggtttttg |
6522279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 6517053 - 6516870
Alignment:
| Q |
1 |
ataaccaaaccatatatggtctttgtcaatgcacacctgatttgtataaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattg |
100 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| ||| || |
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| T |
6517053 |
ataatcaaaccatatatggtctagctcaatgcacacctgatttgtttaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatg |
6516954 |
T |
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| Q |
101 |
ttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaaccaac |
184 |
Q |
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| T |
6516953 |
ttgtaacaacaggatgagtgctagagttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaac |
6516870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 6512654 - 6512475
Alignment:
| Q |
1 |
ataaccaaaccatatatggtctttgtcaatgcacacctgatttgtataaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattg |
100 |
Q |
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|||| ||||| ||||||| |||| |||||||||||||||||||| |||| |||| || |||||||||||||| |||||||||||| ||| ||| || |
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| T |
6512654 |
ataatcaaactatatatgctcttgttcaatgcacacctgatttgtctaaatcattgtgcgatgattgtttggtaaaatctatcaaagcaatcccaagatg |
6512555 |
T |
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| Q |
101 |
ttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaac |
180 |
Q |
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| T |
6512554 |
ttgtaacaacaggttgggtgctagaattgttagaccaagttgttatttgagatatgaaaccgattcactcttctatcaac |
6512475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 6506747 - 6506562
Alignment:
| Q |
1 |
ataaccaaaccatatatggtctttgtcaatgcacacctgatttgtataaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattg |
100 |
Q |
| |
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|||| |||||||||| || |||| |||||||||||||||||||| | ||||||| |||||||| ||||||| | |||||||||||||||| ||||||| |
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| T |
6506747 |
ataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattg |
6506648 |
T |
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| Q |
101 |
ttgtaac-----aataggt-taggtgctagaattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaac |
180 |
Q |
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|||| || ||||||| |||||| |||| || |||||||||||||| ||||||||||||||||||||||| | |||||||||| |
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| T |
6506647 |
ttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaac |
6506562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 286
Target Start/End: Complemental strand, 6506501 - 6506438
Alignment:
| Q |
223 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
286 |
Q |
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|||||||||| |||||| |||||||||| |||||| |||||| ||||||||||| ||||||||| |
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| T |
6506501 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
6506438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 47778382 - 47778456
Alignment:
| Q |
86 |
agaaatttcaaattgttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagatatgaaac |
160 |
Q |
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| T |
47778382 |
agaaatttcaagatgttgtaaaaataggattggtgctagaattgttagacctagctgtaatttgaggtttgaaac |
47778456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 160
Target Start/End: Original strand, 47788475 - 47788578
Alignment:
| Q |
57 |
tgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagatatg |
156 |
Q |
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||||||||||||||| ||||||| || ||| |||||| ||||||| ||||||| | |||||||||||| ||||||| || ||||||||||| | || |
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| T |
47788475 |
tgtgatgattgtttgcttcaatccattgctgaagtttcaagatgttgtagcaataggattggtgctagaattattagaccaagctgtaatttgaggtttg |
47788574 |
T |
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| Q |
157 |
aaac |
160 |
Q |
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|||| |
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| T |
47788575 |
aaac |
47788578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 772 - 587
Alignment:
| Q |
1 |
ataaccaaaccatatatggtctttgtcaatgcacacctgatttgtataaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattg |
100 |
Q |
| |
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|||| |||||||||| || |||| |||||||||||||||||||| | ||||||| |||||||| ||||||| | |||||||||||||||| ||||||| |
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| T |
772 |
ataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattg |
673 |
T |
|
| Q |
101 |
ttgtaac-----aataggt-taggtgctagaattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaac |
180 |
Q |
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|||| || ||||||| |||||| |||| || |||||||||||||| ||||||||||||||||||||||| | |||||||||| |
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| T |
672 |
ttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaac |
587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 8425 - 8240
Alignment:
| Q |
1 |
ataaccaaaccatatatggtctttgtcaatgcacacctgatttgtataaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattg |
100 |
Q |
| |
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|||| |||||||||| || |||| |||||||||||||||||||| | ||||||| |||||||| ||||||| | |||||||||||||||| ||||||| |
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| T |
8425 |
ataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattg |
8326 |
T |
|
| Q |
101 |
ttgtaac-----aataggt-taggtgctagaattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaac |
180 |
Q |
| |
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|||| || ||||||| |||||| |||| || |||||||||||||| ||||||||||||||||||||||| | |||||||||| |
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| T |
8325 |
ttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaac |
8240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 286
Target Start/End: Complemental strand, 526 - 463
Alignment:
| Q |
223 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
286 |
Q |
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|||||||||| |||||| |||||||||| |||||| |||||| ||||||||||| ||||||||| |
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| T |
526 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 286
Target Start/End: Complemental strand, 8179 - 8116
Alignment:
| Q |
223 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
286 |
Q |
| |
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|||||||||| |||||| |||||||||| |||||| |||||| ||||||||||| ||||||||| |
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| T |
8179 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
8116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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