View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2163_low_10 (Length: 293)
Name: NF2163_low_10
Description: NF2163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2163_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 8398854 - 8398752
Alignment:
| Q |
179 |
gtgaacgtacctcaaaattctcctccattcaaccttatccgttgtgatcnnnnnnnnnnnnnnaaggactttgctggatatgtcttcatgcatctttatt |
278 |
Q |
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| T |
8398854 |
gtgaacgtacctcaaaattctcctccattcaaccttatccgttgtgatctttttcctttttttaaggactttgctggatatgtcttcatgcatctttatt |
8398755 |
T |
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| Q |
279 |
ctg |
281 |
Q |
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||| |
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| T |
8398754 |
ctg |
8398752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 8399024 - 8398984
Alignment:
| Q |
2 |
tctcgaagaatatgttaacacataaaaatacagaaaaaagg |
42 |
Q |
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|||||||||| | |||||||||||||||||||||||||||| |
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| T |
8399024 |
tctcgaagaaaaggttaacacataaaaatacagaaaaaagg |
8398984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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