View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2163_low_12 (Length: 256)
Name: NF2163_low_12
Description: NF2163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2163_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 17813593 - 17813787
Alignment:
| Q |
11 |
cacagagcataaccaaaaacgagtgtgtgggtttgggaaatttggcacgtgattcacttaacgtatctttttaatctcagcccttaaatctaatctaaag |
110 |
Q |
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| T |
17813593 |
cacaaagcataaccaaaaacgagtgtgtgggtttgggaaatttggcacgtgattcacttaacgtatctttttaatctcagccctaaaatctaatctaaag |
17813692 |
T |
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| Q |
111 |
gctaaaatttattcttacaatgcttatataaagatggcattctcacttgatatgcatcctatatatatacaccaaatgggtggtagctaagatgc |
205 |
Q |
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| T |
17813693 |
gctaaaatttatccttacaattctcatataaagatggcattctcacttggtatgcatcctatatatatacaccaaatgggtggtagctaagatgc |
17813787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 17813803 - 17813836
Alignment:
| Q |
223 |
agggatggtagctaagatgctagctagctaaccc |
256 |
Q |
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| T |
17813803 |
agggatggtagctaagatgctagctagctaaccc |
17813836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 8351368 - 8351306
Alignment:
| Q |
117 |
atttattcttacaatgcttatataaagatggcattctcacttgatatgcatcctatatatata |
179 |
Q |
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| T |
8351368 |
atttattcttaccattctcatataaacatatcattctcacttgatatgccccctatatatata |
8351306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 571682 - 571752
Alignment:
| Q |
107 |
aaaggctaaaatttattcttacaatgcttatataaagatggcattctcacttgatatgcatcctatatatata |
179 |
Q |
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| T |
571682 |
aaaggctattatttattcttaccattctcatataaacatatcattctcacttgatatgc--cctatatatata |
571752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 43284570 - 43284619
Alignment:
| Q |
78 |
tttttaatctcagcccttaaatc-taatctaaaggct-aaaatttattct |
125 |
Q |
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| T |
43284570 |
tttttaatctcagccattaaatcttaatctaaaggctgaaaatttattct |
43284619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 40317204 - 40317132
Alignment:
| Q |
107 |
aaaggctaaaatttattcttacaatgcttatataaagatggcattctcacttgatatgcatcctatatatata |
179 |
Q |
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| T |
40317204 |
aaaggctgaaaattattcttaccattctcacataaaaatatcattctcacttgatatgccccctatatatata |
40317132 |
T |
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