View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2163_low_13 (Length: 252)
Name: NF2163_low_13
Description: NF2163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2163_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30742651 - 30742890
Alignment:
| Q |
1 |
ctttcaatgtcttaaaatgtataattttgattatcttcctcggtggttgttagacatgtgatatataatcactcatgcgccttaacctttcagcggagct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30742651 |
ctttcaatgtcttaaaatgtataattttgattatcttcctcggtggttgttagacatgtgatatataatcactcatgcgccttaacctttcagcggagct |
30742750 |
T |
|
| Q |
101 |
ggttcattgaattatatcacagcctccatgaccaagtggtctaaaccctagttctagttcattaatgcagattaatgaactttggtgttgttcatcctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30742751 |
ggttcattgaattatatcacagcctccatgaccaagtggtctaaaccctagttctagttcattaatgcagattaatgaactttggtgttgttcatcctca |
30742850 |
T |
|
| Q |
201 |
atgagctaagcgaaagagtgtcaatactaaatacgatatt |
240 |
Q |
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| T |
30742851 |
acgagctaagcgaaagagtgtcaatactaaatacgatatt |
30742890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 7594259 - 7594033
Alignment:
| Q |
10 |
tcttaaaatgtataattttgattatcttcctcggtggttgttagacatgtgatatataatcac---tcatgcgccttaacctttcagcggagctggttca |
106 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || ||| |||||| |||||||||||| || |||| |||| |
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| T |
7594259 |
tcttaaaatgtataattttgattatcttcttcggtggttgttagacatgtgattgaaaaacaccattcatgcaccttaacctttcgtgggtgctgtttca |
7594160 |
T |
|
| Q |
107 |
ttgaattatatcacagcctccatgaccaagtggtctaaaccctagttctagttcattaatgcagattaatgaactttggtgttgttcatcctcaatgagc |
206 |
Q |
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| T |
7594159 |
ttgaattatatctcagcctccatgacgaagtggtctaagccccagttc------attaatgcaagttaataaactttggtgttgttcatcctcaatgagc |
7594066 |
T |
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| Q |
207 |
taagcgaaagagtgtcaatactaaatacgatat |
239 |
Q |
| |
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|||||||||||| |||||||||||||| |||| |
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| T |
7594065 |
caagcgaaagagtctcaatactaaatactatat |
7594033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 109 - 240
Target Start/End: Complemental strand, 7559041 - 7558917
Alignment:
| Q |
109 |
gaattatatcacagcctccatgaccaagtggtctaaaccctagttctagttcattaatgcagattaatgaactttggtgttgttcatcctcaatgagcta |
208 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||| || ||||| ||||||||||||||||||||||||||||||| |
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| T |
7559041 |
gaattatatcacagcctccatgaccaagaggtctaaaccctagttc------attaatcaag-ttaataaactttggtgttgttcatcctcaatgagcta |
7558949 |
T |
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| Q |
209 |
agcgaaagagtgtcaatactaaatacgatatt |
240 |
Q |
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| T |
7558948 |
cgcgaaagagtgtcaatactaaataccatatt |
7558917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 109 - 240
Target Start/End: Complemental strand, 7562797 - 7562673
Alignment:
| Q |
109 |
gaattatatcacagcctccatgaccaagtggtctaaaccctagttctagttcattaatgcagattaatgaactttggtgttgttcatcctcaatgagcta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||| || ||||| ||||||||||||||||||||||||||||||| |
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| T |
7562797 |
gaattatatcacagcctccatgaccaagaggtctaaaccctagttc------attaatcaag-ttaataaactttggtgttgttcatcctcaatgagcta |
7562705 |
T |
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| Q |
209 |
agcgaaagagtgtcaatactaaatacgatatt |
240 |
Q |
| |
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|||||| |||||||||||||||||| ||||| |
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| T |
7562704 |
cgcgaaaaagtgtcaatactaaataccatatt |
7562673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 8967808 - 8968034
Alignment:
| Q |
10 |
tcttaaaatgtataattttgattatcttcctcggtggttgttagacatgtgatatataatcac---tcatgcgccttaacctttcagcggagctggttca |
106 |
Q |
| |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||| | || ||| |||||| |||||||||||| || |||| |||| |
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| T |
8967808 |
tcttaaaatgtataattttgattatcctcttcggtggttgttagacatgtgattgaaaaacaccattcatgcaccttaacctttcgtgggtgctgtttca |
8967907 |
T |
|
| Q |
107 |
ttgaattatatcacagcctccatgaccaagtggtctaaaccctagttctagttcattaatgcagattaatgaactttggtgttgttcatcctcaatgagc |
206 |
Q |
| |
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|||||||||||| ||||||||||||| ||||| ||||| |||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
8967908 |
ttgaattatatctcagcctccatgacgaagtgttctaagccctag------ttcattaatgcaagttaataaactttggtgttgttcatcctcaatgagc |
8968001 |
T |
|
| Q |
207 |
taagcgaaagagtgtcaatactaaatacgatat |
239 |
Q |
| |
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|||||||||||||||||| |||||||| |||| |
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| T |
8968002 |
caagcgaaagagtgtcaatgctaaatactatat |
8968034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 109 - 240
Target Start/End: Original strand, 8992911 - 8993035
Alignment:
| Q |
109 |
gaattatatcacagcctccatgaccaagtggtctaaaccctagttctagttcattaatgcagattaatgaactttggtgttgttcatcctcaatgagcta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||| || ||||| ||||||||||||||||||||||||||||||| |
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| T |
8992911 |
gaattatatcacagcctccatgaccaagaggtctaaaccctagttc------attaatcaag-ttaataaactttggtgttgttcatcctcaatgagcta |
8993003 |
T |
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| Q |
209 |
agcgaaagagtgtcaatactaaatacgatatt |
240 |
Q |
| |
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|||||| |||||||||||||||||| ||||| |
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| T |
8993004 |
cgcgaaaaagtgtcaatactaaataccatatt |
8993035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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