View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2163_low_14 (Length: 251)
Name: NF2163_low_14
Description: NF2163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2163_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 35442795 - 35442632
Alignment:
| Q |
1 |
aatatgtttgagtaacatttgtttttaacaactacctcactaatttcagcttaccaaattaaatagatattttggaaaccaaattcttgtttaattatac |
100 |
Q |
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| T |
35442795 |
aatatgtttgagtaacatttgtttttaacaactacctcactaatttcagcttaccaaattaaatagatattttggaaaccaaattcttgtttaattatac |
35442696 |
T |
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| Q |
101 |
gaagtagaacaaaataaagtaaattcaaagccctaataacaagttccttctccatcctctgttg |
164 |
Q |
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| T |
35442695 |
gaagtagaacaaaataaagtaaattcaaagccctaataacaagttccttctccatcctctgttg |
35442632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 35442608 - 35442560
Alignment:
| Q |
187 |
cagagagaatgttcttcatgttggtgttgtaaaaatcaacacaattttg |
235 |
Q |
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| T |
35442608 |
cagagagaatgttcttcatgttggtgttgtaaaaatcaacacaattttg |
35442560 |
T |
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