View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2163_low_18 (Length: 242)
Name: NF2163_low_18
Description: NF2163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2163_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 30742592 - 30742449
Alignment:
| Q |
1 |
acctataaatagtatttttgaaaataagaatgtttccgaaaatgaatattcacaacttacctataatctgaccactatgccacaatattaaaacagaatt |
100 |
Q |
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| T |
30742592 |
acctataaatagtatttttgaaaataacaatgtttccgaaaatgaatattcacaacttacctataatctgaccactatgccacaatattaaaacagaatt |
30742493 |
T |
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| Q |
101 |
ggagaaaatcacctgccaatctaaacagaattgcgtttaacggt |
144 |
Q |
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| T |
30742492 |
ggagaaaatcacctgccaatctaaacagaattgcgtttaacggt |
30742449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 30742401 - 30742320
Alignment:
| Q |
145 |
ttacaagttagtatattgtataacatgtcctttctactcttaaaatgtggactgaatatctcatcacttttaaacaagttgc |
226 |
Q |
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| T |
30742401 |
ttacaaggtagtatactgtataacatgtcctttctactcttaaaatgtggactgaatatctcatcacttttaaacaagttgc |
30742320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 18887928 - 18887866
Alignment:
| Q |
156 |
tatattgtataacatgtcctttctactcttaaaatgtggactgaatatctcatcacttttaaa |
218 |
Q |
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| T |
18887928 |
tatattgtataacatgtccattctacacttaaaatgtgaaatgaatattgcatcacttctaaa |
18887866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 19162554 - 19162625
Alignment:
| Q |
156 |
tatattgtataacatgtcctttctactcttaaaatgtggact-gaatatctcatcacttttaaacaagttgc |
226 |
Q |
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| T |
19162554 |
tatactgtataacatgtccattctactctaaaaatgtggactggaatgtctcgtcatttataaataagttgc |
19162625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 44186106 - 44186143
Alignment:
| Q |
189 |
atgtggactgaatatctcatcacttttaaacaagttgc |
226 |
Q |
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| T |
44186106 |
atgtggactgaatatctcatcacatctaaacaagttgc |
44186143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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