View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2163_low_3 (Length: 401)
Name: NF2163_low_3
Description: NF2163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2163_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 11 - 385
Target Start/End: Complemental strand, 8553137 - 8552763
Alignment:
| Q |
11 |
cataggaactacaaatttgatgattatctagtagaaaccatagttcaaatttgcaagacagnnnnnnntgaagacctttgttcgatgtaaagaaaaaata |
110 |
Q |
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| T |
8553137 |
cataggaactacaaatttgatgattatctagtagaaaccatagttcaaatttgcaagacagaaaaaa-tgaagacctttgttcgatgtaaaggaaaaata |
8553039 |
T |
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| Q |
111 |
atatcagcgtatggtaactgccaatgctattattaatgaatatgttttctcatgaagcatatgcgcatacataccaatatttttcttaatggtttttcag |
210 |
Q |
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| T |
8553038 |
atatcagcgtatggtaactgccaatgctattattaatgaatatgttttctcatgaagcatatgcgcatacataccaatatttttcttaatggtttttcag |
8552939 |
T |
|
| Q |
211 |
acaataattagaatattgcaacgtttgaaagtttaggctttattgtgaagatacctatatttatttacc-nnnnnnnncctattacctaccttatgacat |
309 |
Q |
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| T |
8552938 |
acaataattagaatattgcaacgtttgaaagtttaggctttcatgtgaagatccctatatttatttaccaaaaaaaaaactattacctaccttatgacat |
8552839 |
T |
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| Q |
310 |
gaaattaattataacactcatccttgcatagaaaaatatgtctagcaaggcttaaacatatactagaagaataaac |
385 |
Q |
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| T |
8552838 |
gaaattaattataacactcatccttgcatagaaaaatatgtctagcaaggcttaaacagatactataagaataaac |
8552763 |
T |
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