View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2163_low_8 (Length: 315)
Name: NF2163_low_8
Description: NF2163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2163_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 31369953 - 31369669
Alignment:
| Q |
17 |
atttgtagatataaaatacctcatgtatgattagccaaaatatgattgtgtattgatcaaatatcctatgtttttgtagattcttttctttctctcgtgt |
116 |
Q |
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| T |
31369953 |
atttgtagatataaaatacctcatgtatgattagccaaaatatgattgtgtattgatcaaatttcctacgtttttgtagattcttttctttctctcgtgt |
31369854 |
T |
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| Q |
117 |
taaaaatccttggattaaattgtgacaagttacactatcattcactcatctaattaattaataatatgatacagggactgctgagagtaacaagagaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31369853 |
taaaaatccttggattaaattgtgacaagttacattatcattcactcatctaattaattaataatatgatacagggactgctgagagtaacaagagaaaa |
31369754 |
T |
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| Q |
217 |
ggagattgaagttcttgtgactgagattgatggcttaaaattcaaattaacagatggggttgatgtagcacacgatggtactatt |
301 |
Q |
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| T |
31369753 |
ggagattgaagttcttgtgactgagattgacggcttacaattcaaattaacagatggggttgatgtcgcacatgatggtactatt |
31369669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 29 - 301
Target Start/End: Complemental strand, 31382148 - 31381880
Alignment:
| Q |
29 |
aaaatacctcatgtatgattagccaaaatatgattgtgtattgatcaaatatcctatgtttttgtagattcttttctttctctcgtgttaaaaatccttg |
128 |
Q |
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| T |
31382148 |
aaaatacctcatgtatgattagtcaaaatatgattgtcgattgatcaaatttcctatgttcttatagattattttctttctc--gtgttaaa--tccttg |
31382053 |
T |
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| Q |
129 |
gattaaattgtgacaagttacactatcattcactcatctaattaattaataatatgatacagggactgctgagagtaacaagagaaaaggagattgaagt |
228 |
Q |
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| T |
31382052 |
gattaaattgtgacaagttatattatcattcactcatctaattaattaatgatatgctacagggactgctgagagtaacaagagaaaaagagattgaagt |
31381953 |
T |
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| Q |
229 |
tcttgtgactgagattgatggcttaaaattcaaattaacagatggggttgatgtagcacacgatggtactatt |
301 |
Q |
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| T |
31381952 |
acttgtgactgagattgatggcttaaaattcaaagtaatagatggggttgatgtagcacatgatggtactatt |
31381880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 154 - 301
Target Start/End: Complemental strand, 31404042 - 31403891
Alignment:
| Q |
154 |
tcattcactcatctaattaattaataa----tatgatacagggactgctgagagtaacaagagaaaaggagattgaagttcttgtgactgagattgatgg |
249 |
Q |
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| T |
31404042 |
tcattcactcatctaattaattaattaatggtatgattcagggattgctgagagtaacaagagaaaaagagattgaagtacttgtgactgagattgatgg |
31403943 |
T |
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| Q |
250 |
cttaaaattcaaattaacagatggggttgatgtagcacacgatggtactatt |
301 |
Q |
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| T |
31403942 |
cttaaaattcaaattaacagatggggttgatgtagcacatgatggtactatt |
31403891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 31404201 - 31404086
Alignment:
| Q |
29 |
aaaatacctcatgtatgattagccaaaatatgattgtgtattgatcaaatatcctatgtttttgtagattcttttctttctctcgtgttaaaaatccttg |
128 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||| |||||||| ||||||||||||||||| |||||||| |||||| |
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| T |
31404201 |
aaaatacctcatgtatgattagccaaaatatgtttgtgaattgat----------atgtttttacagattcttttctttctc--gtgttaaa--tccttg |
31404116 |
T |
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| Q |
129 |
gattaaattgtgacaagttacactatcatt |
158 |
Q |
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| T |
31404115 |
gattaaattgtgacaagttgcattatcatt |
31404086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 31420319 - 31420279
Alignment:
| Q |
244 |
tgatggcttaaaattcaaattaacagatggggttgatgtag |
284 |
Q |
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| T |
31420319 |
tgatggattaaaattcaagttaacagatggggttgatgtag |
31420279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 154 - 301
Target Start/End: Complemental strand, 33621021 - 33620871
Alignment:
| Q |
154 |
tcattcactcatctaattaattaataa----tatgatacagggactgctgagagtaacaagagaaaaggagattgaagttcttgtgactgagattgatgg |
249 |
Q |
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||||||||||||||||||||||||| | |||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
33621021 |
tcattcactcatctaattaattaattaatggtatgattcagggattgctgagagtaacaagagaaaaagagattgaagtacttgtgactgagattgatgg |
33620922 |
T |
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| Q |
250 |
cttaaaattcaaattaacagatggggttgatgtagcacacgatggtactatt |
301 |
Q |
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|||||||||||||||||||||| |||||||||| ||||| |||||||||||| |
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| T |
33620921 |
cttaaaattcaaattaacagat-gggttgatgttgcacatgatggtactatt |
33620871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 33621180 - 33621065
Alignment:
| Q |
29 |
aaaatacctcatgtatgattagccaaaatatgattgtgtattgatcaaatatcctatgtttttgtagattcttttctttctctcgtgttaaaaatccttg |
128 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||| |||||||| ||||||||||||||||| |||||||| |||||| |
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| T |
33621180 |
aaaatacctcatgtatgattagccaaaatatgtttgtgaattgat----------atgtttttacagattcttttctttctc--gtgttaaa--tccttg |
33621095 |
T |
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| Q |
129 |
gattaaattgtgacaagttacactatcatt |
158 |
Q |
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||||||||||||||||||| || ||||||| |
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| T |
33621094 |
gattaaattgtgacaagttgcattatcatt |
33621065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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