View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21640_high_10 (Length: 237)
Name: NF21640_high_10
Description: NF21640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21640_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 39510227 - 39510015
Alignment:
| Q |
5 |
tcaggtcaaggtctgcctgaatttcagactgagataatggttttgtcaaagattcgtcatcggcatcttgtttccttaattgggtattgtgatgaaaggt |
104 |
Q |
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| T |
39510227 |
tcaggtcaaggactacctgaatttcagactgagataatggttttgtcaaagattcgtcatcgacaccttgtttccttaattgggtattgtgatgaaaggt |
39510128 |
T |
|
| Q |
105 |
atgagatgatacttgtttatgagtacatggaaaaggggacacttagagaaagtttgtacggtgcaaatttgcctagtttcttgacttggaagcaaaggct |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39510127 |
atgagatgatacttgtttatgagtacatggaaaaggggacacttaaagaaagtttgtaaggtgcaaatttgcctagtttcttgacttggaagcaaaggct |
39510028 |
T |
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| Q |
205 |
tgagatttgtatt |
217 |
Q |
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||||||||||||| |
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| T |
39510027 |
tgagatttgtatt |
39510015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 39520489 - 39520340
Alignment:
| Q |
1 |
aggatcaggtcaaggtctgcctgaatttcagactgagataatggttttgtcaaagattcgtcatcggcatcttgtttccttaattgggtattgtgatgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39520489 |
aggatcaggtcaaggtctgcctgaatttcagactgagataatggttttgtccaagattcgtcatcggcatcttgtttccttaattgggtattgtgatgaa |
39520390 |
T |
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| Q |
101 |
aggtatgagatgatacttgtttatgagtacatggaaaaggggacacttag |
150 |
Q |
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| T |
39520389 |
aggtatgagatgatacttgtttatgagtacatggaaaaggggacacttag |
39520340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 39579660 - 39579448
Alignment:
| Q |
5 |
tcaggtcaaggtctgcctgaatttcagactgagataatggttttgtcaaagattcgtcatcggcatcttgtttccttaattgggtattgtgatgaaaggt |
104 |
Q |
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| T |
39579660 |
tcaggtcaaggacttcctgaatttgaagctgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgggtattgtgatgaagggt |
39579561 |
T |
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| Q |
105 |
atgagatgatacttgtttatgagtacatggaaaaggggacacttagagaaagtttgtacggtgcaaatttgcctagtttcttgacttggaagcaaaggct |
204 |
Q |
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|||||||||||||||||||||| || |||||||| |||||||||| ||| | ||||||| | || |||||||||||| |||||||||||||||||||| |
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| T |
39579560 |
atgagatgatacttgtttatgaatatatggaaaaagggacacttaaagagaatttgtacaataaaagtttgcctagttttttgacttggaagcaaaggct |
39579461 |
T |
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| Q |
205 |
tgagatttgtatt |
217 |
Q |
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||||||||||||| |
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| T |
39579460 |
tgagatttgtatt |
39579448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 5 - 213
Target Start/End: Complemental strand, 39575124 - 39574919
Alignment:
| Q |
5 |
tcaggtcaaggtctgcctgaatttcagactgagataatggttttgtcaaagattcgtcatcggcatcttgtttccttaattgggtattgtgatgaaaggt |
104 |
Q |
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||||||||||| | | ||||||||| |||||||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||||||||| |
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| T |
39575124 |
tcaggtcaaggacgtcatgaatttcaaactgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgcatattgtgatgaaaggt |
39575025 |
T |
|
| Q |
105 |
atgagatgatacttgtttatgagtacatggaaaaggggacacttagagaaagtttgtacggtgcaaatttgcctagtttcttgacttggaagcaaaggct |
204 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |||||||||||||| | |||||||| | ||||||||||| || |||||||||||||||||||| |
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| T |
39575024 |
gtgagatgatacttgtttacgagtacatggaaaatgggacacttagagataatttgtacgatacaaatttgccttgt---ttgacttggaagcaaaggct |
39574928 |
T |
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| Q |
205 |
tgagatttg |
213 |
Q |
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||||||||| |
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| T |
39574927 |
tgagatttg |
39574919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 5 - 213
Target Start/End: Complemental strand, 39543289 - 39543084
Alignment:
| Q |
5 |
tcaggtcaaggtctgcctgaatttcagactgagataatggttttgtcaaagattcgtcatcggcatcttgtttccttaattgggtattgtgatgaaaggt |
104 |
Q |
| |
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||||||||||| | | ||||||||| ||||||||||||||| |||| ||||||||||| || |||||||||||||| ||||||||||||||||||| |
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| T |
39543289 |
tcaggtcaaggacaacatgaatttcaaactgagataatggttctgtccaagattcgtcacaaacaccttgtttccttaatagggtattgtgatgaaaggt |
39543190 |
T |
|
| Q |
105 |
atgagatgatacttgtttatgagtacatggaaaaggggacacttagagaaagtttgtacggtgcaaatttgcctagtttcttgacttggaagcaaaggct |
204 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||| || | ||| ||| | ||||||||||| || |||||||||||||||||||| |
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| T |
39543189 |
gtgagatgatacttgtttatgagtacatggaaaatggtacacttagggagaatttatacaatacaaatttgccttgt---ttgacttggaagcaaaggct |
39543093 |
T |
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| Q |
205 |
tgagatttg |
213 |
Q |
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||||||||| |
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| T |
39543092 |
tgagatttg |
39543084 |
T |
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