View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21640_low_2 (Length: 486)
Name: NF21640_low_2
Description: NF21640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21640_low_2 |
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| [»] chr4 (11 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 200 - 486
Target Start/End: Complemental strand, 39520770 - 39520484
Alignment:
| Q |
200 |
attagtaaaatcaggaaacaaaggcctgttgagaattccgaatggttgcccattccagctgccagaggagggagttctcacagcagattaactgatgcaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39520770 |
attagtaaaatcaggaaacaaaggcctgttgagaattccgaatggttgcccattccagctgccagaggagggagttctcacagcagattaactgatgcaa |
39520671 |
T |
|
| Q |
300 |
caacaattcaaggctcacctttacctaacataaaccttggattgaaaatccctttgcttgatcttcaatttgcaacggataattttgatgcgaagaggat |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
39520670 |
caacaattcaaggctcacctttacctaacataaaccttggattgaaaatccctttgcttgatcttcaatttgcaacggataatttcgatgcaaagaggat |
39520571 |
T |
|
| Q |
400 |
tattggaaagggtggttttggaattgtttataagggagtcctcacgaatggagttagtgttgcagtgaaaagaagtgagccaggatc |
486 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39520570 |
tattggaaagggtggttttggaattgtttataagggagtcctcacgaatggagttagtgttgcagtgaaaagaagtgagccaggatc |
39520484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 200 - 483
Target Start/End: Complemental strand, 39510512 - 39510229
Alignment:
| Q |
200 |
attagtaaaatcaggaaacaaaggcctgttgagaattccgaatggttgcccattccagctgccagaggagggagttctcacagcagattaactgatgcaa |
299 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39510512 |
attagtaaaatcaggaaacaaaggcctgttgaaaattccgaatggttgccaattccagctgccagaggagggagttctcacagcagattaactgatgcaa |
39510413 |
T |
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| Q |
300 |
caacaattcaaggctcacctttacctaacataaaccttggattgaaaatccctttgcttgatcttcaatttgcaacggataattttgatgcgaagaggat |
399 |
Q |
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|| ||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||| |
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| T |
39510412 |
cagcaattcaaggctcccctttacctaacataaacctcggattgaaaatccccttgcttgatcttcaattcgcaacggataactttgatgcaaagaggat |
39510313 |
T |
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| Q |
400 |
tattggaaagggtggttttggaattgtttataagggagtcctcacgaatggagttagtgttgcagtgaaaagaagtgagccagg |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39510312 |
aattggaaagggtggttttggaattgtttataagggagttctcaggaatggagttagtgttgcagtgaaaagaagtgagccagg |
39510229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 200 - 363
Target Start/End: Complemental strand, 39524255 - 39524092
Alignment:
| Q |
200 |
attagtaaaatcaggaaacaaaggcctgttgagaattccgaatggttgcccattccagctgccagaggagggagttctcacagcagattaactgatgcaa |
299 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39524255 |
attagtaaaatcaggaaacaaaggcctgttgagaagtccgaatggttgcctattccagctgccagaggaggaagttctcacagcagattaactgatgcaa |
39524156 |
T |
|
| Q |
300 |
caacaattcaaggctcacctttacctaacataaaccttggattgaaaatccctttgcttgatct |
363 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39524155 |
caacaattcaaggctcgcctttacctaacataaaccttggattgaaaatccctttgcttgatct |
39524092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 200 - 483
Target Start/End: Complemental strand, 39575409 - 39575126
Alignment:
| Q |
200 |
attagtaaaatcaggaaacaaaggcctgttgagaattccgaatggttgcccattccagctgccagaggagggagttctcacagcagattaactgatgcaa |
299 |
Q |
| |
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|||||||||||||||||||||||||||||||||| || ||| | |||||| |||||| |||| |||||||| |||||| |||| ||||||| ||| || |
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| T |
39575409 |
attagtaaaatcaggaaacaaaggcctgttgagagtttcgatttgttgccgattccaactgctgcaggagggatttctcatagcaaattaacttatggaa |
39575310 |
T |
|
| Q |
300 |
caacaattcaaggctcacctttacctaacataaaccttggattgaaaatccctttgcttgatcttcaatttgcaacggataattttgatgcgaagaggat |
399 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| |||||||| | |||||||| |||||| | || || || ||||||||| | |||||||| |
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| T |
39575309 |
aaacaactcaaggctcacctttacctaacataaaccttggcatgaaaatctccttgcttgaccttcaaatcgccaccgagaattttgatacaaagaggat |
39575210 |
T |
|
| Q |
400 |
tattggaaagggtggttttggaattgtttataagggagtcctcacgaatggagttagtgttgcagtgaaaagaagtgagccagg |
483 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| |||| ||||||| | | ||| |||||||||||||| | |||||| |
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| T |
39575209 |
tattggaaagggtggttttggaaatgtttataagggagttctcaagaatggaatgaatgtggcagtgaaaagaagcgtgccagg |
39575126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 200 - 474
Target Start/End: Complemental strand, 39579945 - 39579671
Alignment:
| Q |
200 |
attagtaaaatcaggaaacaaaggcctgttgagaattccgaatggttgcccattccagctgccagaggagggagttctcacagcagattaactgatgcaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| | ||| | | || |||||| |||||||| || | || |||||||| ||| || |
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| T |
39579945 |
attagtaaaatcaggaaacaaaggcctgtggagaattccggttttttggcgactcaagctgctgcaggagggatatcccttagaagattaacatatggaa |
39579846 |
T |
|
| Q |
300 |
caacaattcaaggctcacctttacctaacataaaccttggattgaaaatccctttgcttgatcttcaatttgcaacggataattttgatgcgaagaggat |
399 |
Q |
| |
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||||| ||||||||| ||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||||| || |||||||||||| | ||||| |
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| T |
39579845 |
aaacaactcaaggctcgcctttacctaacataaaccttggcctgaaaatctccttgcttgatcttcaattcgcaacagagaattttgatgcggataggat |
39579746 |
T |
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| Q |
400 |
tattggaaagggtggttttggaattgtttataagggagtcctcacgaatggagttagtgttgcagtgaaaagaag |
474 |
Q |
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|| ||||| ||||||||||||| ||||||||||||||| |||| ||||||| | ||||| |||||||||||||| |
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| T |
39579745 |
aatcggaaaaggtggttttggaaatgtttataagggagttctcaagaatggaatgagtgtagcagtgaaaagaag |
39579671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 244 - 476
Target Start/End: Complemental strand, 39543530 - 39543298
Alignment:
| Q |
244 |
gttgcccattccagctgccagaggagggagttctcacagcagattaactgatgcaacaacaattcaaggctcacctttacctaacataaaccttggattg |
343 |
Q |
| |
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|||||| |||||| |||| ||||| || |||||| |||| ||||||| ||| || ||||| ||||||||||||||||||||||||||||||||| || |
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| T |
39543530 |
gttgccgattccaactgctgcaggagagatttctcatagcaaattaacttatggaaaaacaactcaaggctcacctttacctaacataaaccttggcatg |
39543431 |
T |
|
| Q |
344 |
aaaatccctttgcttgatcttcaatttgcaacggataattttgatgcgaagaggattattggaaagggtggttttggaattgtttataagggagtcctca |
443 |
Q |
| |
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|||||| | |||||||| |||||| | || || || ||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
39543430 |
aaaatctccttgcttgaccttcaaatcgccaccgagaattttgatacaaagaggattattggaaagggtggttttggaaatgtttataagggagttctca |
39543331 |
T |
|
| Q |
444 |
cgaatggagttagtgttgcagtgaaaagaagtg |
476 |
Q |
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||||||| | | ||| |||||||||||||||| |
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| T |
39543330 |
agaatggaatgaatgtggcagtgaaaagaagtg |
39543298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 39520913 - 39520995
Alignment:
| Q |
1 |
ccatttaaaaatgctttcggtacaaaatccgacacattaggttgtacggtaacattcagtttcccagaggcatcggattgaac |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39520913 |
ccatttaaaaatgctttcggtacaaaatccgacacattaggttgtacggtaacattcaggttcccagaggcatcggattgaac |
39520995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 39575555 - 39575637
Alignment:
| Q |
1 |
ccatttaaaaatgctttcggtacaaaatccgacacattaggttgtacggtaacattcagtttcccagaggcatcggattgaac |
83 |
Q |
| |
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|||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39575555 |
ccatttaaaaatgcgttcggtacaaaatccaacacattaggttgtacggtaaccttcagtttcccagaggcatcggattgaac |
39575637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 39520894 - 39520834
Alignment:
| Q |
76 |
gattgaacaatctagtgaaattcccttcgatgatttggattcaaaggttagtcttcctgta |
136 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39520894 |
gattgaacaatctagtgaaattcccttcgatgatttggattcaaaggttagtcttcctgta |
39520834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 39510636 - 39510577
Alignment:
| Q |
76 |
gattgaacaatctagtgaaattcccttcgatgatttggattcaaaggttagtcttcctgt |
135 |
Q |
| |
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||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |
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| T |
39510636 |
gattgaacaatctagtgaaattcccccggatgatatggattcgaaggttagtcttcctgt |
39510577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 39580097 - 39580154
Alignment:
| Q |
1 |
ccatttaaaaatgctttcggtacaaaatccgacacattaggttgtacggtaacattca |
58 |
Q |
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|||||||||||||| |||||||||||||| | ||||||||||| || |||||| |||| |
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| T |
39580097 |
ccatttaaaaatgcattcggtacaaaatcggtcacattaggttttatggtaaccttca |
39580154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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