View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21640_low_4 (Length: 456)
Name: NF21640_low_4
Description: NF21640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21640_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 14 - 439
Target Start/End: Complemental strand, 51913066 - 51912642
Alignment:
| Q |
14 |
gagatgaacgtaacttgagtcagttttggtttccaatattgagcacacccatgtgtgaattatttctttcttttccttctgtttcgtacacgcgtgcagt |
113 |
Q |
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| T |
51913066 |
gagatgaacgtaacttgagttagttttggtttccaatattgagcacacccatgtgtgaattatttctttcttttccttctgtttcgtacacgcgtgcagt |
51912967 |
T |
|
| Q |
114 |
aaacca-ggggaaaaagcaaaagaagaaactactgtatagtagcaacttctaccgcagtacatcatcaaagttaacaatacttccttctcaattattact |
212 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51912966 |
aaaccaaggggaaaaagcaaaagaagaaactactgtatagtagcaacttctaccgcagtacatcatcaaagttaacaatacttccttctcaattattact |
51912867 |
T |
|
| Q |
213 |
aattaccggttatttccaaatgtcttattccaaacgttattgagcttgaatgaccactaattggtgtaccgaatgaagagtcatttcccgtgtgtcctgc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51912866 |
aattaccggttatttccaaatgtcttattccaaacgttattgagcttgaatgaccactaattggtgtaccgaatgaagagtcatttcccgtgtgtcctgc |
51912767 |
T |
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| Q |
313 |
ctgtgctctgtgctctgtgtgtgtcagttatgcagaaagnnnnnnnnnggcagctcacactcactcacacccctcacttattttcctgccgtgcacccaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51912766 |
ctgtgctctgtgctctgtgtgtgtcagttatgcagaaa--aaaaaaaaggcagctcacactcactcacacccctcacttattttcctgccgtgcacccaa |
51912669 |
T |
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| Q |
413 |
tttgattatttcatcgatcatcaaatt |
439 |
Q |
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||||||||||||||||||||||||||| |
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| T |
51912668 |
tttgattatttcatcgatcatcaaatt |
51912642 |
T |
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