View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21640_low_5 (Length: 454)
Name: NF21640_low_5
Description: NF21640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21640_low_5 |
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| [»] chr4 (11 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 168 - 454
Target Start/End: Complemental strand, 39520770 - 39520484
Alignment:
| Q |
168 |
attagtaaaatcaggaaacaaaggcctgttgagaattccgaatggttgcccattccagctgccagaggagggagttctcacagcagattaactgatgcaa |
267 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39520770 |
attagtaaaatcaggaaacaaaggcctgttgagaattccgaatggttgcccattccagctgccagaggagggagttctcacagcagattaactgatgcaa |
39520671 |
T |
|
| Q |
268 |
caacaattcaaggctcacctttacctaacataaaccttggattgaaaatccctttgcttgatcttcaatttgcaacggataattttgatgcgaagaggat |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
39520670 |
caacaattcaaggctcacctttacctaacataaaccttggattgaaaatccctttgcttgatcttcaatttgcaacggataatttcgatgcaaagaggat |
39520571 |
T |
|
| Q |
368 |
tattggaaagggtggttttggaattgtttataagggagtcctcacgaatggagttagtgttgcagtgaaaagaagtgagccaggatc |
454 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39520570 |
tattggaaagggtggttttggaattgtttataagggagtcctcacgaatggagttagtgttgcagtgaaaagaagtgagccaggatc |
39520484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 168 - 451
Target Start/End: Complemental strand, 39510512 - 39510229
Alignment:
| Q |
168 |
attagtaaaatcaggaaacaaaggcctgttgagaattccgaatggttgcccattccagctgccagaggagggagttctcacagcagattaactgatgcaa |
267 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39510512 |
attagtaaaatcaggaaacaaaggcctgttgaaaattccgaatggttgccaattccagctgccagaggagggagttctcacagcagattaactgatgcaa |
39510413 |
T |
|
| Q |
268 |
caacaattcaaggctcacctttacctaacataaaccttggattgaaaatccctttgcttgatcttcaatttgcaacggataattttgatgcgaagaggat |
367 |
Q |
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|| ||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||| |
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| T |
39510412 |
cagcaattcaaggctcccctttacctaacataaacctcggattgaaaatccccttgcttgatcttcaattcgcaacggataactttgatgcaaagaggat |
39510313 |
T |
|
| Q |
368 |
tattggaaagggtggttttggaattgtttataagggagtcctcacgaatggagttagtgttgcagtgaaaagaagtgagccagg |
451 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39510312 |
aattggaaagggtggttttggaattgtttataagggagttctcaggaatggagttagtgttgcagtgaaaagaagtgagccagg |
39510229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 168 - 331
Target Start/End: Complemental strand, 39524255 - 39524092
Alignment:
| Q |
168 |
attagtaaaatcaggaaacaaaggcctgttgagaattccgaatggttgcccattccagctgccagaggagggagttctcacagcagattaactgatgcaa |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39524255 |
attagtaaaatcaggaaacaaaggcctgttgagaagtccgaatggttgcctattccagctgccagaggaggaagttctcacagcagattaactgatgcaa |
39524156 |
T |
|
| Q |
268 |
caacaattcaaggctcacctttacctaacataaaccttggattgaaaatccctttgcttgatct |
331 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39524155 |
caacaattcaaggctcgcctttacctaacataaaccttggattgaaaatccctttgcttgatct |
39524092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 168 - 451
Target Start/End: Complemental strand, 39575409 - 39575126
Alignment:
| Q |
168 |
attagtaaaatcaggaaacaaaggcctgttgagaattccgaatggttgcccattccagctgccagaggagggagttctcacagcagattaactgatgcaa |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||| | |||||| |||||| |||| |||||||| |||||| |||| ||||||| ||| || |
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| T |
39575409 |
attagtaaaatcaggaaacaaaggcctgttgagagtttcgatttgttgccgattccaactgctgcaggagggatttctcatagcaaattaacttatggaa |
39575310 |
T |
|
| Q |
268 |
caacaattcaaggctcacctttacctaacataaaccttggattgaaaatccctttgcttgatcttcaatttgcaacggataattttgatgcgaagaggat |
367 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| |||||||| | |||||||| |||||| | || || || ||||||||| | |||||||| |
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| T |
39575309 |
aaacaactcaaggctcacctttacctaacataaaccttggcatgaaaatctccttgcttgaccttcaaatcgccaccgagaattttgatacaaagaggat |
39575210 |
T |
|
| Q |
368 |
tattggaaagggtggttttggaattgtttataagggagtcctcacgaatggagttagtgttgcagtgaaaagaagtgagccagg |
451 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||| ||||||| | | ||| |||||||||||||| | |||||| |
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| T |
39575209 |
tattggaaagggtggttttggaaatgtttataagggagttctcaagaatggaatgaatgtggcagtgaaaagaagcgtgccagg |
39575126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 168 - 442
Target Start/End: Complemental strand, 39579945 - 39579671
Alignment:
| Q |
168 |
attagtaaaatcaggaaacaaaggcctgttgagaattccgaatggttgcccattccagctgccagaggagggagttctcacagcagattaactgatgcaa |
267 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| | ||| | | || |||||| |||||||| || | || |||||||| ||| || |
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| T |
39579945 |
attagtaaaatcaggaaacaaaggcctgtggagaattccggttttttggcgactcaagctgctgcaggagggatatcccttagaagattaacatatggaa |
39579846 |
T |
|
| Q |
268 |
caacaattcaaggctcacctttacctaacataaaccttggattgaaaatccctttgcttgatcttcaatttgcaacggataattttgatgcgaagaggat |
367 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||||| || |||||||||||| | ||||| |
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| T |
39579845 |
aaacaactcaaggctcgcctttacctaacataaaccttggcctgaaaatctccttgcttgatcttcaattcgcaacagagaattttgatgcggataggat |
39579746 |
T |
|
| Q |
368 |
tattggaaagggtggttttggaattgtttataagggagtcctcacgaatggagttagtgttgcagtgaaaagaag |
442 |
Q |
| |
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|| ||||| ||||||||||||| ||||||||||||||| |||| ||||||| | ||||| |||||||||||||| |
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| T |
39579745 |
aatcggaaaaggtggttttggaaatgtttataagggagttctcaagaatggaatgagtgtagcagtgaaaagaag |
39579671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 212 - 444
Target Start/End: Complemental strand, 39543530 - 39543298
Alignment:
| Q |
212 |
gttgcccattccagctgccagaggagggagttctcacagcagattaactgatgcaacaacaattcaaggctcacctttacctaacataaaccttggattg |
311 |
Q |
| |
|
|||||| |||||| |||| ||||| || |||||| |||| ||||||| ||| || ||||| ||||||||||||||||||||||||||||||||| || |
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|
| T |
39543530 |
gttgccgattccaactgctgcaggagagatttctcatagcaaattaacttatggaaaaacaactcaaggctcacctttacctaacataaaccttggcatg |
39543431 |
T |
|
| Q |
312 |
aaaatccctttgcttgatcttcaatttgcaacggataattttgatgcgaagaggattattggaaagggtggttttggaattgtttataagggagtcctca |
411 |
Q |
| |
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|||||| | |||||||| |||||| | || || || ||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
39543430 |
aaaatctccttgcttgaccttcaaatcgccaccgagaattttgatacaaagaggattattggaaagggtggttttggaaatgtttataagggagttctca |
39543331 |
T |
|
| Q |
412 |
cgaatggagttagtgttgcagtgaaaagaagtg |
444 |
Q |
| |
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||||||| | | ||| |||||||||||||||| |
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| T |
39543330 |
agaatggaatgaatgtggcagtgaaaagaagtg |
39543298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 39520937 - 39520834
Alignment:
| Q |
1 |
ttgtaccgaaagcatttttaaatgggctagaactaatgaaagtgattgaacaatctagtgaaattcccttcgatgatttggattcaaaggttagtcttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39520937 |
ttgtaccgaaagcatttttaaatgggctagaactaatgaaagtgattgaacaatctagtgaaattcccttcgatgatttggattcaaaggttagtcttcc |
39520838 |
T |
|
| Q |
101 |
tgta |
104 |
Q |
| |
|
|||| |
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|
| T |
39520837 |
tgta |
39520834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 39510676 - 39510577
Alignment:
| Q |
4 |
taccgaaagcatttttaaatgggctagaactaatgaaagtgattgaacaatctagtgaaattcccttcgatgatttggattcaaaggttagtcttcctgt |
103 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |
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| T |
39510676 |
taccgaatgcatttttaaatgggctagaactaatggaagtgattgaacaatctagtgaaattcccccggatgatatggattcgaaggttagtcttcctgt |
39510577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 39580121 - 39580071
Alignment:
| Q |
1 |
ttgtaccgaaagcatttttaaatgggctagaactaatgaaagtgattgaac |
51 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39580121 |
ttgtaccgaatgcatttttaaatgggctagaactaatgaaagtgattgaac |
39580071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 39524421 - 39524376
Alignment:
| Q |
5 |
accgaaagcatttttaaatgggctagaactaatgaaagtgattgaa |
50 |
Q |
| |
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|||||| || |||||||| ||||||||||||||||||||||||||| |
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| T |
39524421 |
accgaatgcttttttaaacgggctagaactaatgaaagtgattgaa |
39524376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 39575579 - 39575536
Alignment:
| Q |
1 |
ttgtaccgaaagcatttttaaatgggctagaactaatgaaagtg |
44 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||| |||| |
|
|
| T |
39575579 |
ttgtaccgaacgcatttttaaatggactagaactaatgacagtg |
39575536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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