View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21640_low_6 (Length: 397)
Name: NF21640_low_6
Description: NF21640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21640_low_6 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 11 - 397
Target Start/End: Complemental strand, 39521574 - 39521188
Alignment:
| Q |
11 |
acatcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39521574 |
acatcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctactg |
39521475 |
T |
|
| Q |
111 |
gtcggggcttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39521474 |
gtcggggcttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaac |
39521375 |
T |
|
| Q |
211 |
cgatacattatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttgacggtggtattccacgcactgca |
310 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || |||||||| | |||||||||||||||| |
|
|
| T |
39521374 |
cgatacattatcgagagaatggttagcagatgacagttatgtaactaatccacaaaacgctaagaatcgctcctttgacgttcatattccacgcactgca |
39521275 |
T |
|
| Q |
311 |
aatgatacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttct |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39521274 |
aatgatacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttct |
39521188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 11 - 397
Target Start/End: Complemental strand, 39576219 - 39575830
Alignment:
| Q |
11 |
acatcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| |||||| | ||| |||| ||||| | ||| || |
|
|
| T |
39576219 |
acatcatcatttgcgtttgttaatgcaatagaactctttatgcttccggttcatttaatccctgattcaatgccacatttctcttacaaagaatctggtg |
39576120 |
T |
|
| Q |
111 |
gtcgggg---cttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagagg |
207 |
Q |
| |
|
||| || |||| ||||||||| |||||||||||||||||||||| | |||||||| |||| ||| |||||||||||| ||| || |||||||| |
|
|
| T |
39576119 |
ttcgaggaggcttatctacttatattggcggtttacactcacaacgagccttggaaacaaaacatcgttttaacgtcggtgggggaaccgttgatagagg |
39576020 |
T |
|
| Q |
208 |
aaccgatacattatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttgacggtggtattccacgcact |
307 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| |
|
|
| T |
39576019 |
aactgatactttatcgagagaatggttaccagatgacagatatgtaactaatctacaaaacgctaagaattgctcctttgacggtgatattccacgcact |
39575920 |
T |
|
| Q |
308 |
gcaaatgatacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttct |
397 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39575919 |
gcaaatgatacgtctgatggtccaaattcaaatcaatatattgctccagatattgtttataaaactggcaaagagagtattaacggttct |
39575830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 11 - 384
Target Start/End: Complemental strand, 39544367 - 39543997
Alignment:
| Q |
11 |
acatcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatg |
110 |
Q |
| |
|
||||| |||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||| ||||| |||| |||||||||||||| | |||| |
|
|
| T |
39544367 |
acatcttcatttgcgttttttaatgcatttgaactctttattctccctcttcatttaatacccaattcaatagctcgtttcaattacattgattctgcca |
39544268 |
T |
|
| Q |
111 |
gtcggggcttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaac |
210 |
Q |
| |
|
||| |||||||||||||||| | ||| | ||| ||| ||||||||||||| || ||||||| || ||| | ||||||||||||| ||| |
|
|
| T |
39544267 |
ttcgaaacttaactacttatagtaatgatttcctctctcaa---tcgttggaaaccatccttggtcttaatgttggtagcggaactgtcgatagaaaaac |
39544171 |
T |
|
| Q |
211 |
cgatacattatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttgacggtggtattccacgcactgca |
310 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||| | || ||| |||||||||| |
|
|
| T |
39544170 |
cgatactttatcgagagaatggttaccagatgacagttatataactaatccacaaaacgctaagaatggttcctttgcagatgaaattaaacgcactgca |
39544071 |
T |
|
| Q |
311 |
aatgatacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagag |
384 |
Q |
| |
|
||| |||||| ||| ||||||||||||||| |||||||||||| ||| |||||| |||||| ||||||||| |
|
|
| T |
39544070 |
aataatacatatgaaggtccaaattcaaatatatatattgctccggacgctgtttatgaaactgccaaagagag |
39543997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 15 - 396
Target Start/End: Complemental strand, 39525067 - 39524689
Alignment:
| Q |
15 |
catcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatggtcg |
114 |
Q |
| |
|
|||||||||| |||| ||||||||| |||||||||||||||||| |||||||||||||||| ||| | || | |||| |||||| | |||| ||| | |
|
|
| T |
39525067 |
catcatttgcctttgctaatgcaatagaactctttatgctccctgttcatttaatccccgactcaatcgcgcttttccattacaaagagtctactggcag |
39524968 |
T |
|
| Q |
115 |
gggcttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaaccgat |
214 |
Q |
| |
|
|||| ||||||||||| | ||| | ||| | |||||||||||||||| ||||||||||| || |||| | || ||| |||||| ||| ||| |
|
|
| T |
39524967 |
aaacttatctacttatagtaatgatttcctctctc---gatcgttggaaaccaacctccgtcttaatgttggtggcggaattgttaatagagaaactgat |
39524871 |
T |
|
| Q |
215 |
acattatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttgacggtggtattccacgcactgcaaatg |
314 |
Q |
| |
|
||| |||| ||||||||||||||||||||||| ||| ||||| ||| ||||||||||||||| | |||||| |||| |||| |||||||||||||| |
|
|
| T |
39524870 |
acactatcaagagaatggttaccagatgacagatatataactgatccccaaaacgctaagaatggttcctttgaaggtgatattaaacgcactgcaaatg |
39524771 |
T |
|
| Q |
315 |
atacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttc |
396 |
Q |
| |
|
|| ||||| || | ||||||||||| |||| || | |||||| | |||||| |||||| ||||| |||| |||| ||||| |
|
|
| T |
39524770 |
atgaatctgttgattcaaattcaaataaatacataggtccagatattgtttataaaactgccaaagtgagtgttaatggttc |
39524689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 13 - 385
Target Start/End: Complemental strand, 39511326 - 39510957
Alignment:
| Q |
13 |
atcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatggt |
112 |
Q |
| |
|
||||||| | || |||||||| ||||| ||||||||| ||||||| ||||||||||||| |||||||| ||||| | ||||| | |||| | | |
|
|
| T |
39511326 |
atcatcactcgcatttgttaacgcaatagaactctttgtgctccccgttcatttaatccctgattcagtgttgcgttttacttacaaagaatctagttct |
39511227 |
T |
|
| Q |
113 |
cggggcttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaaccg |
212 |
Q |
| |
|
| |||||| ||| |||||||||||||||| ||||||||||| | |||||||| |||| ||||||||||| || | | | |||| ||||| | ||| |
|
|
| T |
39511226 |
ccaggcttatctaattatagtggcggtttaaactcacaacgagctttggaaacgaaacatcgtcttaacgtaggcggtgataatgtcactagagaagccg |
39511127 |
T |
|
| Q |
213 |
atacattatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttgacggtggtattccacgcactgcaaa |
312 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||| || ||||||||| |||||| || |||| | | ||||| ||| |||| || | ||||||| |
|
|
| T |
39511126 |
atacattatcaagagaatggttacgagatgacagatacataactaatccacaaaatgcgaagattggttcctttg---gtgatattaaacacgctgcaaa |
39511030 |
T |
|
| Q |
313 |
tgatacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagt |
385 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||| |||||| | |||||| |||||||| |||||||| |
|
|
| T |
39511029 |
tgatgaatctgatggtccaaattcaagtatatatattggtccagatattgtttataaaactggccaagagagt |
39510957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 14 - 358
Target Start/End: Complemental strand, 39580756 - 39580415
Alignment:
| Q |
14 |
tcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatggtc |
113 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||| |||||| |||||||| ||||| ||| |||||||||||| ||||| ||||| |
|
|
| T |
39580756 |
tcatcatttgcgtttgttaatgcaatggaactctttatactccccactcatttcatccccgaatcagtcacacatttcaattacattaattctactggtc |
39580657 |
T |
|
| Q |
114 |
ggggcttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagagg-aaccg |
212 |
Q |
| |
|
|||||| || |||| | |||||||||| ||| ||| | |||||||||| | |||||||| |||||||| || | || | || || || | |
|
|
| T |
39580656 |
aaggcttatcttcttacactggcggtttattctc---gcgagccttggaaaccattcaccgtcttaccgtcggtggagaagccatc-acaggggaaaaca |
39580561 |
T |
|
| Q |
213 |
atacattatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttgacggtggtattccacgcactgcaaa |
312 |
Q |
| |
|
||| ||||| ||| | |||||||||||||||||||| | ||||||| ||| |||||||||||| ||||||| |||| |||| |||||||||| |
|
|
| T |
39580560 |
atagcttatcaagaaagtggttaccagatgacagttacatcactaatccacataacgctaagaatggtttctttggaggtgatattaaacgcactgcagg |
39580461 |
T |
|
| Q |
313 |
tgatacatctgatggtccaaattcaaatcaatatattgctccagac |
358 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||||| ||||||| |
|
|
| T |
39580460 |
tgatgaatctgatggtccaaattcaaatatacatattggtccagac |
39580415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University