View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21640_low_7 (Length: 348)
Name: NF21640_low_7
Description: NF21640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21640_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 47933751 - 47934093
Alignment:
| Q |
1 |
attttgaacggaaaagctcctcttttacttttgtttaggggttcttgtaagtgggcccgccattggattcttctattttgccttctaattaaccatttgt |
100 |
Q |
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||||||||||||||||||||||| |||| |||||||| || ||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
47933751 |
attttgaacggaaaagctcctctgttacctttgtttatggtttcttgtcagtgagcccgccattggattcttctcttttgccttctaattaaccatttgt |
47933850 |
T |
|
| Q |
101 |
tgcccttctagaacatcggttgagggtttcgtcattgttagtgctactacctcgccattacccctgacagttattttcgaatataccagttttgatgcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47933851 |
tgcccttctagaacatcggttgagggtttcgtcattgttagtgctactacctcgccaatacccctgacagttattttcgaatataccagctttgatgcaa |
47933950 |
T |
|
| Q |
201 |
tggtaaagttgctgtcacgtaactaaaagggtatttaggtcttgagaacaccctctggtgtaaacaacacggaagcagcgcacaatataccaattgattg |
300 |
Q |
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||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47933951 |
tggtaaagttgttgtcacgtaactaaaaaggtatttaagtcttgagaacaccctctggtgtaaacatcacggaagcagcgcacaatataccaattgattg |
47934050 |
T |
|
| Q |
301 |
gacccccttcctagaacggctcatttactagaacggctctctg |
343 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47934051 |
gacccccttcctagaacggctcatttactagaatggctctctg |
47934093 |
T |
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