View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21640_low_8 (Length: 326)
Name: NF21640_low_8
Description: NF21640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21640_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 316
Target Start/End: Original strand, 47933332 - 47933629
Alignment:
| Q |
17 |
atttttctgatggtcattacttccgcgtatattctgtaggatcagtttgaaaaattgaccttttttccgaaaattccaagggaatgaaaccaagtggcca |
116 |
Q |
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| T |
47933332 |
atttttctgatggtcattacttc-gcgtatattctgtaggatcagtttgaaaaattgaccttttttccgaaaattccaagggaatgaaaccaagtggcca |
47933430 |
T |
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| Q |
117 |
ttgcctccatgagatgatcttcttcttcgttgaacaagtctaagatagaatcgtcttggcaatcaagttgactatcaaattcaccttattttaatgatgt |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47933431 |
ttgcctccatgagatgatctgcttcttcgttgaacaagtctaagatagaatcgtctaggcaatcaagttgactatcaaattcaccttattttaatgatgt |
47933530 |
T |
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| Q |
217 |
gaggtcaggacatgagaagctataatatattatagtttggaagtgcctcaagttcttgcataccatattgtttcaaattctttcacattcctaccctttg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47933531 |
gaggtcaggacatgagaagctataatatattatagttcggaagtgcctcaagttcttgcatacca-attgtttcaaattctttcacattcctaccctttg |
47933629 |
T |
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