View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21640_low_9 (Length: 250)
Name: NF21640_low_9
Description: NF21640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21640_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 28392963 - 28392719
Alignment:
| Q |
1 |
tcattggcataaggtatgaaaatggtttataattggagcaaatacccatcttacaaaccaattttagatgggttaagtcctactcattatcattatgtcg |
100 |
Q |
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| T |
28392963 |
tcattggcataaggtatgaaaatggtttataattggagaaaatacccatcttacaaaccaattttagatgggttaagtcctactcattatcattatgtcg |
28392864 |
T |
|
| Q |
101 |
cggtattttataaatctttgaaaattcattcgattttgttaagagtcatacattatatatgagatcaagtttaaaaatgagtttataagtggagttgttc |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| |
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| T |
28392863 |
cggtattttataaatctttgaaaattcattcggttttgttaagagtcatacattatatacgagatcaagtctaaaaatgagttcataagtggagttgttc |
28392764 |
T |
|
| Q |
201 |
tcagcttacctaacccaattttaagaatttctctttcttttctct |
245 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28392763 |
tcagcttacctaacccaattttaaaaatttctctttcttttctct |
28392719 |
T |
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