View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21641_high_1 (Length: 513)
Name: NF21641_high_1
Description: NF21641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21641_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 42483552 - 42483999
Alignment:
| Q |
1 |
tggaaaacaatggcagaagagaaagactgtaacaacgaaagcatagacctttctacaccaatgtcggaaaccccaattagagcagtggtttgtctcaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42483552 |
tggaaaacaatggcagaagagaaagactgtaacaacgaaagcatagacctttctacaccaatgtcggaaaccccaattagagcagtggtttgtctcaaaa |
42483651 |
T |
|
| Q |
101 |
gaaaagaagacatcaaacgtttcgaggaaactgaagaatgcttcatcttagatttcgatgacccatctgattctctatcaaagctttcgttggagaaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42483652 |
gaaaagaagacatcaaacgtttcgaggaaactgaagaatgcttcatcttagatttcgatgacccatctgattctctatcaaagctttcgttggagaaaga |
42483751 |
T |
|
| Q |
201 |
gatcaacgataatcataatgatgatagccctgatatcgctgttcttgctgaaaagggtcaggtaaaaatacaactatg-tttttcactacaaaacctttc |
299 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42483752 |
gatcgacgataatcataatgatgatagccctgatatcgctgttcttgctgaaaagggtcaggtaaaaatacaactatgttttttcactacaaaacctttc |
42483851 |
T |
|
| Q |
300 |
attttatacttttatgtttcattgattatggattttatttggattcaaggttatgaacaaaatcaaaactaggtttcagttatttgggattggactgtct |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42483852 |
attttatacttttatgtttcattgattatggattttatttggattcaaggttatgaacaaaatcaaaactaggtttcagttatttgggattggactgtct |
42483951 |
T |
|
| Q |
400 |
tgttcttgataactttcaaatatgtgtttaatcactgtaaagtttaca |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42483952 |
tgttcttgataactttcaaatatgtgtttaatcactgtaaagtttaca |
42483999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 42491521 - 42491565
Alignment:
| Q |
90 |
ttgtctcaaaagaaaagaagacatcaaacgtttcgaggaaactga |
134 |
Q |
| |
|
||||||||||| || || |||||||||||||||||||||||||| |
|
|
| T |
42491521 |
ttgtctcaaaaaaatcgacgacatcaaacgtttcgaggaaactga |
42491565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University