View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21641_low_3 (Length: 390)
Name: NF21641_low_3
Description: NF21641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21641_low_3 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 382
Target Start/End: Complemental strand, 25802394 - 25802018
Alignment:
| Q |
20 |
tcatttccccatcgttaagaaccatcggcagcttcgcgcaacatgggtggaggtcgaacccacaggttctgct--------------cgttcacgtcctt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
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| T |
25802394 |
tcatttccccatcgttaagaaccatcggcagcttcgcgcaacatgggtggaggtcgaacccacaggatttgcagtggtaaacaaacccgttcacgtcctt |
25802295 |
T |
|
| Q |
106 |
ttcgcatgcgttgcaataacgcggcgtgtttcctggtggaatttgcatgaactgaaaggtgcattttgtgtaaaatggatggaagagtgtggtggaaggt |
205 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802294 |
ttcgcatgcgttgcaataacgcagcgtgtttcctggtggaatttgcatgaactgaaaggtgcattttgtgtaaaatggatggaagagtgtggtggaaggt |
25802195 |
T |
|
| Q |
206 |
attgcgcagtgtgtgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatttgaatggaaattcgt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802194 |
attgcgcagtgtgtgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatttgaatggaaattcgt |
25802095 |
T |
|
| Q |
306 |
tgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctcactgtatttcattgttctgtttcatctc |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25802094 |
tgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctcactgtatttcattgttctgtttcttctc |
25802018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 161 - 382
Target Start/End: Complemental strand, 25816332 - 25816111
Alignment:
| Q |
161 |
aaggtgcattttgtgtaaaatggatggaagagtgtggtggaaggtattgcgcagtgtgtgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaac |
260 |
Q |
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| T |
25816332 |
aaggtgcattttgtgtagaacgcatggaagagtgtggtagaaggtattgtgcagtgtgtgtgaaggtcattgtcacaaatgctgcatttgtaacgtgaac |
25816233 |
T |
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| Q |
261 |
ctatgcctatttctttgcagccgtcgcatttgaatggaaattcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctcactgta |
360 |
Q |
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| T |
25816232 |
ctatgcctacttcgttgcaaccgtcgcatttgaatggaaattcgttgtgttcgaatcttagtttgtgttttgggtggctgaaatgtgatatctcgttgta |
25816133 |
T |
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| Q |
361 |
tttcattgttctgtttcatctc |
382 |
Q |
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||||||||||||||||| |||| |
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| T |
25816132 |
tttcattgttctgtttcttctc |
25816111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 20 - 376
Target Start/End: Original strand, 112137 - 112507
Alignment:
| Q |
20 |
tcatttccccatcgttaagaaccatcggcagcttcgcgcaacatgggtggaggtcgaacccacaggttctgct--------------cgttcacgtcctt |
105 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| | ||| ||||||| ||||| |
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| T |
112137 |
tcatttccccgtcgttaagaaccatcggcagctttgcgcaacacgggtggaggtcgaacccacaggatttgcagtggtaaacaaacccgttcacatcctt |
112236 |
T |
|
| Q |
106 |
ttcgcatgcgttgcaataacgcggcgtgtttcctggtggaatttgcatgaactgaaaggtgcattttgtgtaaaatggatggaagagtgtggtggaaggt |
205 |
Q |
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||||||||||||||| ||| ||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
112237 |
ttcgcatgcgttgcagtaatgcggcgtgtttcctggtgggatttgcatgaattggaaggtgcattttgtgtaaaatggatcgaagagtgtggtggaaggt |
112336 |
T |
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| Q |
206 |
attgcgcagtgtgtgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatttgaatggaaattcgt |
305 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
112337 |
attgcgcagtgtgtatgaaggtcgtagtcgcagatgctgcatttttaacgtgaatcgatgcctatttctttgcagccatcgcatttgaatggaaattcgt |
112436 |
T |
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| Q |
306 |
tgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctcactgtatttcattgttctgttt |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
112437 |
tgtgctcgaatcttagtttgtgttttgggtggctgaaatgtgatatctcactgtatttcattgttctgttt |
112507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 361
Target Start/End: Complemental strand, 12530663 - 12530521
Alignment:
| Q |
219 |
tgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatttgaatggaaattcgttgtgctcgaatct |
318 |
Q |
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||||||| || ||||| || ||| |||| ||||||| ||||||||||| |||||||||||||| || |||||||||||||| ||| ||| | ||| | |
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| T |
12530663 |
tgtgaagatcatagtcacaaatgttgcagctgtaacgcgaacctatgccaatttctttgcagccatcacatttgaatggaaactcggagtgttgaaatgt |
12530564 |
T |
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| Q |
319 |
tagtttgtgttttgggtggctgaaatgggatatctcactgtat |
361 |
Q |
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|||||| |||||| | ||||| ||||| ||||||||| ||||| |
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| T |
12530563 |
tagtttatgtttttgatggctaaaatgagatatctcattgtat |
12530521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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