View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21641_low_4 (Length: 318)
Name: NF21641_low_4
Description: NF21641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21641_low_4 |
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| [»] scaffold0449 (1 HSPs) |
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| [»] scaffold0696 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 3183 - 2896
Alignment:
| Q |
13 |
aatatagatcaagttatgatgtttgaggagtcaactatgaaatgggagacttttcagaatttgtgtttgagatttaactaactttcctttcacttttcct |
112 |
Q |
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| T |
3183 |
aatatagatcaagttatgatgtttgaggagtcaactatgaaatgggagacttttcagaatttgtgtttgagatttaactaactttcctttcacttttcct |
3084 |
T |
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| Q |
113 |
attacactataaatagattaatgaagtaccattagtaattcatttaaagttgtctatcatatcaggcaggcaggccctcatattctatagctacagggaa |
212 |
Q |
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| T |
3083 |
attacactataaatagattaatgaagtaccattagtaattcatttaaagttgtctatcatatcaggcaggcaggccctcatattctatagctacggggaa |
2984 |
T |
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| Q |
213 |
cgtgtaaccctcctattcaaccatgacctcataaaaaatcttctttgagagatccaaatccacgagtatctttgcataatgccgatat |
300 |
Q |
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| T |
2983 |
cgtgtaaccctcctattcaaccatgacctcataaaaaatcttctttgagagatccaaatccacgagtatctttgcataatgccgatat |
2896 |
T |
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Target: scaffold0696 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0696
Description:
Target: scaffold0696; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 4063 - 4136
Alignment:
| Q |
217 |
taaccctcctattcaaccatgacctcataaaaaatcttctttgagagatccaaatccacgagtatctttgcata |
290 |
Q |
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| T |
4063 |
taaccctcctgttcgaccatgacctcataaaaaatattctttgagagatccaaatccaagagaatctgtgcata |
4136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 8686758 - 8686831
Alignment:
| Q |
217 |
taaccctcctattcaaccatgacctcataaaaaatcttctttgagagatccaaatccacgagtatctttgcata |
290 |
Q |
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| T |
8686758 |
taaccctcctgttcgaccatgacctcataaaaaatattctttgagagatccaaatccaagagaatctgtgcata |
8686831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 293
Target Start/End: Original strand, 22392799 - 22392874
Alignment:
| Q |
218 |
aaccctcctattcaaccatgacctcataaaaaatcttctttgagagatccaaatccacgagtatctttgcataatg |
293 |
Q |
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|||||||| |||| ||||| ||||||||||||| ||| |||| |||||||||||||| |||||| ||||||||| |
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| T |
22392799 |
aaccctcccattcgaccatcgcctcataaaaaatattccttgaaagatccaaatccacaagtatccgtgcataatg |
22392874 |
T |
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