View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21642_high_1 (Length: 432)
Name: NF21642_high_1
Description: NF21642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21642_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 12 - 416
Target Start/End: Original strand, 25923402 - 25923806
Alignment:
| Q |
12 |
catcatcatcaaaacagaacaacccccgtttgtctttgtcctgacagtatcttcaatggctttctgttcgaatctttgcctacgtctccccgccactcgc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25923402 |
catcatcatcaaaacagaacaacccccgtttgtctttgtcctgacagtatcttcaatggctttctgttcgaatctttgcctacgtctccccgccacccgc |
25923501 |
T |
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| Q |
112 |
atcgatgttccttctccgaccactttccgctgccgcaaactcttctccgtccgttgctccgccgatgccgatttcgacccaaaactcttccgtaagaatc |
211 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25923502 |
atcgacgttccttctccgaccactttccgctgccgcaaactcttctccgtccgttgctccgccgatgccgatttcgacccaaaactcttccgtaagaatc |
25923601 |
T |
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| Q |
212 |
tcacaagaagtgagaattataaccgcaaaggctttggtcataaagaagagaccctcaaactcatgaatcgcgagtacacaagtatgttacgttttttatt |
311 |
Q |
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| T |
25923602 |
tcacaagaagtgagaattataaccgcaaaggctttggtcataaagaagagaccctcaaactcatgaatcgcgagtacacaagtatgttacgttttttctt |
25923701 |
T |
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| Q |
312 |
ttcaagtcaaaacaatttcacttattggaattcagctgaaaaatcattgtttagcttatttttatatgtattacatttaattattcaattttgtcaaatg |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25923702 |
ttcaagtcaaaacaatttcacttattggaattcagctgaaaaatctttgtttagcttatttttatatgtattacatttaattattcaattttgtcaaatg |
25923801 |
T |
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| Q |
412 |
attat |
416 |
Q |
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||||| |
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| T |
25923802 |
attat |
25923806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 221 - 299
Target Start/End: Original strand, 25944903 - 25944981
Alignment:
| Q |
221 |
gtgagaattataaccgcaaaggctttggtcataaagaagagaccctcaaactcatgaatcgcgagtacacaagtatgtt |
299 |
Q |
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|||||||||||||||||||||||||||| | || |||||||| |||||||||||||||| ||||||||| |||||||| |
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| T |
25944903 |
gtgagaattataaccgcaaaggctttggacgcaaggaagagactctcaaactcatgaatcacgagtacaccagtatgtt |
25944981 |
T |
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