View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21642_low_3 (Length: 377)
Name: NF21642_low_3
Description: NF21642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21642_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 14431323 - 14431097
Alignment:
| Q |
13 |
cagaatcgtctctctcttgaggtcaaactcctctccagttgtaccttcggtactgataccttgatcggcaaggttcatatccctctcaaggagcttcttg |
112 |
Q |
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| T |
14431323 |
cagaatcgtctctctctcgaggtcaaactcatctccgatcgtaccgttgccggcgataccttgatcggcaaggttcatatccctctcaaggagcttcttg |
14431224 |
T |
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| Q |
113 |
ataacacctccggagattctttccggctggttaattatcaggttagaacgtcttcggggaaagctaaagggaacttaaacctctcttacaaattcggcga |
212 |
Q |
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| T |
14431223 |
ataacccctccggagattctttccggcaggttaattatcaggttagaacatcttcagggaaagctaaaggaaacttaaacctctcttacaaattcggcga |
14431124 |
T |
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| Q |
213 |
aaaagtcaaagctctggggacgaaaac |
239 |
Q |
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| T |
14431123 |
aaaagtccaagctccggcgatgaaaac |
14431097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 239 - 345
Target Start/End: Complemental strand, 14431052 - 14430946
Alignment:
| Q |
239 |
cggtgatggcttatcctccacctggaatggcggcagcggggtctagctcggtgccgtatggtacaccttatcctcctcagctgcaacaaccggtttatgg |
338 |
Q |
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| T |
14431052 |
cggtgatggcttatcctccacctggaatggcggcagctgggtctagctcggtgccgtatggtacaccttatcctcctcagccgcaacaaccgggttatgg |
14430953 |
T |
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| Q |
339 |
atatcca |
345 |
Q |
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| T |
14430952 |
atatcca |
14430946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 362
Target Start/End: Complemental strand, 14430775 - 14430734
Alignment:
| Q |
321 |
gcaacaaccggtttatggatatccagtggcagaagcacagaa |
362 |
Q |
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| T |
14430775 |
gcaacaaccgggttatggatatccaggggcacaagcacagaa |
14430734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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