View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21643_high_12 (Length: 406)
Name: NF21643_high_12
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 174 - 391
Target Start/End: Original strand, 17859508 - 17859725
Alignment:
| Q |
174 |
cactaacactagttttttcaatcacagctcattggttgtgattgagatgatgatgcatctccttgtacaacagctgctctaacaccacaagatgttgatc |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17859508 |
cactaacactagttttttcaatcacagctcattggctgtgattgagatgatgatgcatctccttgtacaacagctgctctaacaccacaagatgttgatc |
17859607 |
T |
|
| Q |
274 |
cattagctgatggtccatcaaattctatatacaaatacaaggaccaagcaatatgattagttaatggcatttaaacaagaataaatgccacacatttaaa |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17859608 |
cattagctgatggtccatcaaattctatatacaaatacaaggaccaagcaatatgattagttaatggcatttaaacaagaataaatgccacacatttaaa |
17859707 |
T |
|
| Q |
374 |
agttaaaataaacatatt |
391 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
17859708 |
agttaaaataaacatatt |
17859725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 17859347 - 17859411
Alignment:
| Q |
13 |
aaaatgcactaagcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
77 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17859347 |
aaaatgcactaagcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
17859411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 174 - 391
Target Start/End: Complemental strand, 34916304 - 34916087
Alignment:
| Q |
174 |
cactaacactagttttttcaatcacagctcattggttgtgattgagatgatgatgcatctccttgtacaacagctgctctaacaccacaagatgttgatc |
273 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34916304 |
cactaacattagttttttcaatcacagctcattggctgtgattgagatgatgatgcatctccttgtacaacagctgctctaacaccacaagatgttgatc |
34916205 |
T |
|
| Q |
274 |
cattagctgatggtccatcaaattctatatacaaatacaaggaccaagcaatatgattagttaatggcatttaaacaagaataaatgccacacatttaaa |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34916204 |
cattagctgatggtccatcaaattctatatacaaatacaaggaccaagcaatatgattagttaatggcatttaaacaagaataaatgccacacatttaaa |
34916105 |
T |
|
| Q |
374 |
agttaaaataaacatatt |
391 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
34916104 |
agttaaaataaacatatt |
34916087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 34916465 - 34916401
Alignment:
| Q |
13 |
aaaatgcactaagcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
77 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34916465 |
aaaatgcactaagcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
34916401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 174 - 391
Target Start/End: Original strand, 4968039 - 4968256
Alignment:
| Q |
174 |
cactaacactagttttttcaatcacagctcattggttgtgattgagatgatgatgcatctccttgtacaacagctgctctaacaccacaagatgttgatc |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4968039 |
cactaacactagttttttcaatcacagctcattggctgtgattgagatgatgatgcatctccttgtacaacagctgctctaaaaccacaagatgttgatc |
4968138 |
T |
|
| Q |
274 |
cattagctgatggtccatcaaattctatatacaaatacaaggaccaagcaatatgattagttaatggcatttaaacaagaataaatgccacacatttaaa |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4968139 |
cattagctgatggtccatcaaattctatatacaaatacaaggaccaaacaatatgattagttaatggcatttaaacaagaataaatgccacacatttaaa |
4968238 |
T |
|
| Q |
374 |
agttaaaataaacatatt |
391 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4968239 |
agttaaaataaacatatt |
4968256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 4967878 - 4967942
Alignment:
| Q |
13 |
aaaatgcactaagcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
77 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4967878 |
aaaatgcactaagcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
4967942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University