View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21643_high_2 (Length: 737)

Name: NF21643_high_2
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21643_high_2
NF21643_high_2
[»] chr7 (3 HSPs)
chr7 (85-483)||(10192567-10192965)
chr7 (482-737)||(10193160-10193415)
chr7 (1-90)||(10192480-10192569)
[»] chr1 (3 HSPs)
chr1 (142-298)||(19460816-19460969)
chr1 (3-90)||(19461084-19461171)
chr1 (430-483)||(19460615-19460668)


Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 85 - 483
Target Start/End: Original strand, 10192567 - 10192965
Alignment:
Q  85 gggcatatatcaatatcaacaatacattatccccacaatatcctttagaacattaatcaagaaccaggaagatcaacatggacatgtgaaggaactctta 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10192567 gggcatatatcaatatcaacaatacattatccccacaatatcctttagaacattaatcaagaaccaggaagatctacatggacatgtgaaggaactctta 10192666  T
Q  185 gcaaccaagctaccaacattagtagggtaacaaattatgtcagcagaatcagtactaaaggagaagtggctaataagaacaaggcgaagaggatttgatc 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10192667 gcaaccaagctaccaacattagtagggtaacaaattatgtcagcagaatcagtactaaaggagaagtggctaataagaacaaggcgaagaggatttgatc 10192766  T
Q  285 tatttcagaaggaggaactctgcttcacttgtgatnnnnnnnttcacaccttcacatgtttgtaaaacatttcatggtgatgattgtgaaggaagaattt 384  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10192767 tatttcagaaggaggaactctgcttcacttgtgataaaaaaattcacaccttcacatgtttgtaaaacatttcatggtgatgattgtgaaggaagaattc 10192866  T
Q  385 gagggagtagaannnnnnnagctagagcaaaatgaaggagttgaattctttgaatgagaaaatggtgaagttggccattcaaagcatagtagggcttac 483  Q
    ||||||||||||       ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10192867 gagggagtagaagggggggagctagagcaaaatgaaggagttgagttctttgaatgagaaaatggtgaagttggccattcaaagcatagtagggcttac 10192965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 482 - 737
Target Start/End: Original strand, 10193160 - 10193415
Alignment:
Q  482 acacggattggaaatttgacagaatatttaccaagcctaccggccatgtcagcacgctaaagtcaacactccaacagtttggaatcatattaactaagct 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10193160 acacggattggaaatttgacagaatatttaccaagcctaccggccatgtcagcacgctaaagtcaacactccaacagtttggaatcatattaactaagct 10193259  T
Q  582 tattccactaacttgatcagttagttaagtacaccctcagtggtgtagaccacacatagcttaccaaaaaccatgtaactaaaaattgacttgttaagta 681  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10193260 tattccactaacttgatcagttagttaagtacaccctcagtggtgtagaccacacatagcttaccaaaagccatgtaactaaaaattgacttgttaagta 10193359  T
Q  682 cacgaagcttgtgtgcagcttaactggtcaaccctaaaaattgacttttaaggtga 737  Q
    || |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10193360 catgaagcttgtgtgcagcttaactggtcaaccctaaaaattgacttgtaaggtga 10193415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 10192569 - 10192480
Alignment:
Q  1 cccaaatctgttttacatttctttttctgtattttacatatctgttctcactattttagtttggaatagccgtggggtaagttggggcat 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||    
T  10192569 cccaaatctgttttacatttctttttctgtattttacatatctgttctctctattttagtttggtatagctgtggggtaagttggggcat 10192480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 142 - 298
Target Start/End: Complemental strand, 19460969 - 19460816
Alignment:
Q  142 caagaaccaggaagatcaacatggacatgtgaaggaactcttagcaaccaagctaccaacattagtagggtaacaaattatgtcagcagaatcagtacta 241  Q
    ||||||||||||||||| |||  || |||||||||||||||  |||||||||||||||||||| | ||||||||||||| |||||  |||||||||| ||    
T  19460969 caagaaccaggaagatctacacagagatgtgaaggaactctccgcaaccaagctaccaacattggcagggtaacaaattctgtcaatagaatcagtaata 19460870  T
Q  242 aaggagaagtggctaataagaacaaggcgaagaggatttgatctatttcagaaggag 298  Q
    |   | ||||| || |||||||||||| |||||||||||||||||||||||||||||    
T  19460869 a---ataagtgactgataagaacaaggggaagaggatttgatctatttcagaaggag 19460816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 19461084 - 19461171
Alignment:
Q  3 caaatctgttttacatttctttttctgtattttacatatctgttctcactattttagtttggaatagccgtggggtaagttggggcat 90  Q
    ||||||||||||||||||||||| ||||||||||||| | | ||||| |||||||||||| | ||||| ||||||||| |||||||||    
T  19461084 caaatctgttttacatttcttttcctgtattttacatttattttctctctattttagtttaggatagctgtggggtaaattggggcat 19461171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 430 - 483
Target Start/End: Complemental strand, 19460668 - 19460615
Alignment:
Q  430 ttctttgaatgagaaaatggtgaagttggccattcaaagcatagtagggcttac 483  Q
    |||||||||||||| |||||||||||| | |||||||||||| |||||||||||    
T  19460668 ttctttgaatgagagaatggtgaagttagacattcaaagcatggtagggcttac 19460615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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