View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21643_high_23 (Length: 270)
Name: NF21643_high_23
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 26877260 - 26877014
Alignment:
| Q |
1 |
catccatcacagtaaattcagacaatattttgaactgcacaaacatcatccacttacagaatcacaaacatgcaatcttgagattgtggagtaagcttcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26877260 |
catccatcacagtaaattcagacaatattttgaactgcacaaacatcattcacttacagaatcacaaacatgcaatcttgagattgtggagtaagcttcc |
26877161 |
T |
|
| Q |
101 |
tcttattgagagaacaacaacaagacagttaactttatgattatccttttcttttcttttcttgcacccacgaaaagtctcacgtcctcaaatattcatc |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26877160 |
tcttattgagagaacaacaacaagacagttaactttatgattatccttttcttttctcttcttgcacccacgaaaagtctcacgtcctcaaatattcatc |
26877061 |
T |
|
| Q |
201 |
tagctttctctttttcatataaggattggtgaatatcacatcctcct |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26877060 |
tagctttctctttttcatataaggattggtgaatatcacatcctcct |
26877014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 26638913 - 26638858
Alignment:
| Q |
192 |
atattcatctagctttctctttttcatataaggattggtgaatatcacatcctcct |
247 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||||||||||||||| |
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| T |
26638913 |
atattcatctaattttctctttctattataaggattggtgaatatcacatcctcct |
26638858 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 26744879 - 26744824
Alignment:
| Q |
192 |
atattcatctagctttctctttttcatataaggattggtgaatatcacatcctcct |
247 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||||||||||||||| |
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| T |
26744879 |
atattcatctaattttctctttctattataaggattggtgaatatcacatcctcct |
26744824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 26827353 - 26827311
Alignment:
| Q |
205 |
tttctctttttcatataaggattggtgaatatcacatcctcct |
247 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
26827353 |
tttctctttctactataaggattggtgaatatcacatcctcct |
26827311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 247
Target Start/End: Complemental strand, 26888314 - 26888285
Alignment:
| Q |
218 |
tataaggattggtgaatatcacatcctcct |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
26888314 |
tataaggattggtgaatatcacatcctcct |
26888285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 18676261 - 18676314
Alignment:
| Q |
192 |
atattcatctagctttctctttttcatataaggattggtgaatatcacatcctc |
245 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
18676261 |
atattcatctatttttctctttctactataaggattggtgaatatcacatcctc |
18676314 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 18720791 - 18720844
Alignment:
| Q |
192 |
atattcatctagctttctctttttcatataaggattggtgaatatcacatcctc |
245 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
18720791 |
atattcatctaattttctctttctactataaggattggtgaatatcacatcctc |
18720844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 18686301 - 18686354
Alignment:
| Q |
192 |
atattcatctagctttctctttttcatataaggattggtgaatatcacatcctc |
245 |
Q |
| |
|
||||||||||| ||||||||| | |||||| ||||||||||||||||||||| |
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|
| T |
18686301 |
atattcatctaattttctctttctactataagaattggtgaatatcacatcctc |
18686354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 18696107 - 18696160
Alignment:
| Q |
192 |
atattcatctagctttctctttttcatataaggattggtgaatatcacatcctc |
245 |
Q |
| |
|
||||||||||| | ||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
18696107 |
atattcatctaattctctctttctactataaggattggtgaatatcacatcctc |
18696160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 18728227 - 18728280
Alignment:
| Q |
192 |
atattcatctagctttctctttttcatataaggattggtgaatatcacatcctc |
245 |
Q |
| |
|
||||||||||| ||||||| | | |||||||||||||||||||||||||||| |
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|
| T |
18728227 |
atattcatctaattttctctatctactataaggattggtgaatatcacatcctc |
18728280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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