View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21643_high_26 (Length: 250)

Name: NF21643_high_26
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21643_high_26
NF21643_high_26
[»] chr7 (2 HSPs)
chr7 (13-250)||(9608222-9608460)
chr7 (13-250)||(9835793-9836031)


Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 9608460 - 9608222
Alignment:
Q  13 aatattgcaaatctgcattagtttgtcctaacata-tatattttaactcacaataaccnnnnnnngaataaaagatattgacctgtatatattatcagca 111  Q
    |||||| |||||| |||||||||||| ||| |||  ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  9608460 aatattacaaatcagcattagtttgtactagcatggtatattttaactcacaataaccaaaaaaagaataaaagatattgacctgtatatattatcagca 9608361  T
Q  112 gaaccaaactcaatataactgaatttacattacataaacataacattccaataaaagaacaaattaaaaatattgtctaaaaagttaagatattgacaca 211  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9608360 gagccaaactcaatataactgaatttacattacataaacataacattccaataaaagaacaaattaaaaatattgtctaaaaatttaagatattgacaca 9608261  T
Q  212 attttatttttgtatcaaaggaggaactaaactaagagc 250  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9608260 attttatttttgtatcaaaggaggaactaaactaagagc 9608222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 9836031 - 9835793
Alignment:
Q  13 aatattgcaaatctgcattagtttgtcctaacata-tatattttaactcacaataaccnnnnnnngaataaaagatattgacctgtatatattatcagca 111  Q
    |||||| |||||| |||||||||||| ||| |||  ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  9836031 aatattacaaatcagcattagtttgtactagcatggtatattttaactcacaataaccaaaaaaagaataaaagatattgacctgtatatattatcagca 9835932  T
Q  112 gaaccaaactcaatataactgaatttacattacataaacataacattccaataaaagaacaaattaaaaatattgtctaaaaagttaagatattgacaca 211  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9835931 gagccaaactcaatataactgaatttacattacataaacataacattccaataaaagaacaaattaaaaatattgtctaaaaatttaagatattgacaca 9835832  T
Q  212 attttatttttgtatcaaaggaggaactaaactaagagc 250  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9835831 attttatttttgtatcaaaggaggaactaaactaagagc 9835793  T

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