View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21643_high_27 (Length: 248)
Name: NF21643_high_27
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 47635081 - 47634844
Alignment:
| Q |
1 |
ttcttagcaccaacagaagaatttgcagcattatctgctgttttgttcattgtatcaaacaacaaaggcatgaatgtctcctggtttgtgatatttaggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47635081 |
ttcttagcaccaacagaagaatttgcagcattatctgctgttttgttcattgtatcaaacaacaaaggcatgaatgtctcctggtttgtgatatttaggc |
47634982 |
T |
|
| Q |
101 |
tgttcatcatgaaaacgccaggccttgtagccacggtggagaaaaaagaggtgttggaatatcgaaccatgcactcgtcgtaccagattacagctcgttt |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47634981 |
tgttcatcatgaaaacgccaggccttgtagccatggtggagaaaaaagaggtgttggaatatcgaaccatgcactcgtcgtaccagattacagcttgttt |
47634882 |
T |
|
| Q |
201 |
ggataaggaacagtctgcatgtgatgatagtctctgtg |
238 |
Q |
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||||||||| |||||||||| ||||||||||||||||| |
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| T |
47634881 |
ggataaggagcagtctgcatctgatgatagtctctgtg |
47634844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 20128155 - 20128262
Alignment:
| Q |
99 |
gctgttcatcatgaaaacgccaggccttgtagccacggtggagaaaaaagaggtgttggaatatcgaaccatgcactcgtcgtaccagattacagctcgt |
198 |
Q |
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||||||||| || ||||| ||||| | ||||| || ||||| || |||||||||||||| ||||||||||||||||| |||||||| || ||||||||| |
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| T |
20128155 |
gctgttcattataaaaacaccaggacgtgtagaaacagtggaaaagaaagaggtgttggagtatcgaaccatgcactcctcgtaccaaatgacagctcgt |
20128254 |
T |
|
| Q |
199 |
ttggataa |
206 |
Q |
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|||||||| |
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| T |
20128255 |
ttggataa |
20128262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 22204715 - 22204608
Alignment:
| Q |
99 |
gctgttcatcatgaaaacgccaggccttgtagccacggtggagaaaaaagaggtgttggaatatcgaaccatgcactcgtcgtaccagattacagctcgt |
198 |
Q |
| |
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||||||||| || ||||| ||||| | ||||| || ||||| || |||||||||||||| ||||||||||||||||| |||||||| || ||||||||| |
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| T |
22204715 |
gctgttcattataaaaacaccaggacgtgtagaaacagtggaaaagaaagaggtgttggagtatcgaaccatgcactcctcgtaccaaatgacagctcgt |
22204616 |
T |
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| Q |
199 |
ttggataa |
206 |
Q |
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|||||||| |
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| T |
22204615 |
ttggataa |
22204608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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