View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21643_high_28 (Length: 239)
Name: NF21643_high_28
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 5299575 - 5299374
Alignment:
| Q |
1 |
tttggttcagcaatatcaaagtgcggaagatgtaatctttataatgttacaacatggcaacagcagccaagttgagagtttcgctactatcctctggaga |
100 |
Q |
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| T |
5299575 |
tttggttcagcaatatcaaagtgcggaagatgtaatctttataatgttacaacatggcaacagcagccaagttgagagtttcgctactatcctctggaga |
5299476 |
T |
|
| Q |
101 |
tgtggaagagcagaaatctcagaatttggcagcaaactagcagctttctggagcgtgcgaaatacttattggaggatttgcgttatgcgcagacttcaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
5299475 |
tgtggaagagcagaaatctcagaatttggcagcaaactagcagctttctggagcgcgcgaaacacttattggaggattggcgttatgcgcagacttcaaa |
5299376 |
T |
|
| Q |
201 |
at |
202 |
Q |
| |
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|| |
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| T |
5299375 |
at |
5299374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 8860906 - 8860767
Alignment:
| Q |
1 |
tttggttcagcaatatcaaagtgcggaagatgtaatctttataatgttacaacatggcaacagcagccaagttgagagtttcgctactatcctctggag- |
99 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||| ||| || ||| |||||||||||||||||||||||||||||||||| || || | ||| |
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| T |
8860906 |
tttggttcagcaatatcaaagtgtggaggatgtaatctttgcaatattgcaatatggcaacagcagccaagttgagagtttcgctacaattctttcgagc |
8860807 |
T |
|
| Q |
100 |
atgtggaagagcagaaatctcagaatttggcagcaaacta |
139 |
Q |
| |
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||||||||||| ||| ||||||||||||| ||||||||| |
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| T |
8860806 |
atgtggaagagtagacatctcagaatttgttagcaaacta |
8860767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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