View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21643_high_3 (Length: 675)
Name: NF21643_high_3
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 10192545 - 10192965
Alignment:
| Q |
1 |
aaaagaaatgtaaaacagatttgggcatatatcaatatcaacaatacattatccccacaatatcctttagaacattaatcaagaaccaggaagatcaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10192545 |
aaaagaaatgtaaaacagatttgggcatatatcaatatcaacaatacattatccccacaatatcctttagaacattaatcaagaaccaggaagatctaca |
10192644 |
T |
|
| Q |
101 |
tggacatgtgaaggaactcttagcaaccaagctaccaacattagtagggtaacaaattatgtcagcagaatcagtactaaaggagaagtggctaataaga |
200 |
Q |
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| T |
10192645 |
tggacatgtgaaggaactcttagcaaccaagctaccaacattagtagggtaacaaattatgtcagcagaatcagtactaaaggagaagtggctaataaga |
10192744 |
T |
|
| Q |
201 |
acaaggcgaagaggatttgatctatttcagaaggaggaactctgcttcacttgtgatnnnnnnnttcacaccttcacatgtttgtaaaacatttcatggt |
300 |
Q |
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| T |
10192745 |
acaaggcgaagaggatttgatctatttcagaaggaggaactctgcttcacttgtgataaaaaaattcacaccttcacatgtttgtaaaacatttcatggt |
10192844 |
T |
|
| Q |
301 |
gatgattgtgaaggaagaatttgagggagtagaannnnnnnagctagagcaaaatgaaggagttgaattctttgaatgagaaaatggtgaagttggccat |
400 |
Q |
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| T |
10192845 |
gatgattgtgaaggaagaattcgagggagtagaagggggggagctagagcaaaatgaaggagttgagttctttgaatgagaaaatggtgaagttggccat |
10192944 |
T |
|
| Q |
401 |
tcaaagcatagtagggcttac |
421 |
Q |
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| T |
10192945 |
tcaaagcatagtagggcttac |
10192965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 420 - 675
Target Start/End: Original strand, 10193160 - 10193415
Alignment:
| Q |
420 |
acacggattggaaatttgacagaatatttaccaagcctaccggccatgtcagcacgctaaagtcaacactccaacagtttggaatcatattaactaagct |
519 |
Q |
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| T |
10193160 |
acacggattggaaatttgacagaatatttaccaagcctaccggccatgtcagcacgctaaagtcaacactccaacagtttggaatcatattaactaagct |
10193259 |
T |
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| Q |
520 |
tattccactaacttgatcagttagttaagtacaccctcagtggtgtagaccacacatagcttaccaaaaaccatgtaactaaaaattgacttgttaagta |
619 |
Q |
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| T |
10193260 |
tattccactaacttgatcagttagttaagtacaccctcagtggtgtagaccacacatagcttaccaaaagccatgtaactaaaaattgacttgttaagta |
10193359 |
T |
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| Q |
620 |
cacgaagcttgtgtgcagcttaactggtcaaccctaaaaattgacttttaaggtga |
675 |
Q |
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| T |
10193360 |
catgaagcttgtgtgcagcttaactggtcaaccctaaaaattgacttgtaaggtga |
10193415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 80 - 236
Target Start/End: Complemental strand, 19460969 - 19460816
Alignment:
| Q |
80 |
caagaaccaggaagatcaacatggacatgtgaaggaactcttagcaaccaagctaccaacattagtagggtaacaaattatgtcagcagaatcagtacta |
179 |
Q |
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||||||||||||||||| ||| || ||||||||||||||| |||||||||||||||||||| | ||||||||||||| ||||| |||||||||| || |
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| T |
19460969 |
caagaaccaggaagatctacacagagatgtgaaggaactctccgcaaccaagctaccaacattggcagggtaacaaattctgtcaatagaatcagtaata |
19460870 |
T |
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| Q |
180 |
aaggagaagtggctaataagaacaaggcgaagaggatttgatctatttcagaaggag |
236 |
Q |
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| | ||||| || |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19460869 |
a---ataagtgactgataagaacaaggggaagaggatttgatctatttcagaaggag |
19460816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 368 - 421
Target Start/End: Complemental strand, 19460668 - 19460615
Alignment:
| Q |
368 |
ttctttgaatgagaaaatggtgaagttggccattcaaagcatagtagggcttac |
421 |
Q |
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|||||||||||||| |||||||||||| | |||||||||||| ||||||||||| |
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| T |
19460668 |
ttctttgaatgagagaatggtgaagttagacattcaaagcatggtagggcttac |
19460615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 19461106 - 19461064
Alignment:
| Q |
1 |
aaaagaaatgtaaaacagatttgggcatatatcaatatcaaca |
43 |
Q |
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| T |
19461106 |
aaaagaaatgtaaaacagatttgttcatacatcaatatcaaca |
19461064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 643 - 675
Target Start/End: Complemental strand, 19459820 - 19459788
Alignment:
| Q |
643 |
ctggtcaaccctaaaaattgacttttaaggtga |
675 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
19459820 |
ctggtcaaccctaaaaattgacttgtaaggtga |
19459788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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