View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21643_high_30 (Length: 238)

Name: NF21643_high_30
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21643_high_30
NF21643_high_30
[»] chr6 (5 HSPs)
chr6 (1-221)||(34957418-34957638)
chr6 (1-64)||(1569971-1570034)
chr6 (2-64)||(7656708-7656770)
chr6 (2-64)||(7672784-7672846)
chr6 (1-56)||(24026229-24026284)
[»] chr5 (2 HSPs)
chr5 (1-116)||(11240585-11240700)
chr5 (1-56)||(22278742-22278797)
[»] chr3 (1 HSPs)
chr3 (1-116)||(11759275-11759390)
[»] chr8 (3 HSPs)
chr8 (15-116)||(129706-129807)
chr8 (16-104)||(34905622-34905710)
chr8 (24-65)||(34905213-34905254)
[»] chr4 (4 HSPs)
chr4 (1-116)||(36230289-36230404)
chr4 (16-104)||(13736915-13737003)
chr4 (16-104)||(13738982-13739070)
chr4 (1-50)||(26888983-26889032)
[»] chr7 (4 HSPs)
chr7 (15-126)||(44213083-44213194)
chr7 (1-64)||(15746277-15746340)
chr7 (1-56)||(17335564-17335619)
chr7 (24-65)||(38657300-38657341)
[»] chr2 (3 HSPs)
chr2 (1-120)||(43881634-43881752)
chr2 (16-104)||(15572577-15572665)
chr2 (1-65)||(18457500-18457560)
[»] chr1 (1 HSPs)
chr1 (1-120)||(48735278-48735397)
[»] scaffold0604 (1 HSPs)
scaffold0604 (14-65)||(7647-7698)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34957418 - 34957638
Alignment:
Q  1 ttatttcacttttcattgaagtttggagattgcaacttagtttggtttctagatctggattcattaaatctcattgttgatttatatagtctttaaactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||    
T  34957418 ttatttcacttttcattgaagtttggagattgcaacttagtttggtttctagatttggattcattaaatctcattgttgatttatgcagtctttaaactt 34957517  T
Q  101 aaagatatgtataagactttctttatcatattaaaggatttgtaatggtatatgtttgctgaatactaggactctctttcgtgtttgctgtttttaatac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  34957518 aaagatatgtataagactttctttatcatattaaaggatttataattgtatatgcttgctgaatactaggactctctttcgtgtttgctgcttttaatac 34957617  T
Q  201 attatgatacaactcagtata 221  Q
    |||||||||||||||||||||    
T  34957618 attatgatacaactcagtata 34957638  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1569971 - 1570034
Alignment:
Q  1 ttatttcacttttcattgaagtttggagattgcaacttagtttggtttctagatctggattcat 64  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1569971 ttatttcactttccattgaagtttggagattgcaacttagtttggtttctagatctggattcat 1570034  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 7656708 - 7656770
Alignment:
Q  2 tatttcacttttcattgaagtttggagattgcaacttagtttggtttctagatctggattcat 64  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7656708 tatttcactttccattgaagtttggagattgcaacttagtttggtttctagatctggattcat 7656770  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 7672846 - 7672784
Alignment:
Q  2 tatttcacttttcattgaagtttggagattgcaacttagtttggtttctagatctggattcat 64  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  7672846 tatttaactttccattgatgtttggagattgcaacttagtttggtttctagatctgaattcat 7672784  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24026229 - 24026284
Alignment:
Q  1 ttatttcacttttcattgaagtttggagattgcaacttagtttggtttctagatct 56  Q
    ||||||||| |||||||  | |||||||||||||||||||||||||||||||||||    
T  24026229 ttatttcacatttcattacattttggagattgcaacttagtttggtttctagatct 24026284  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 11240700 - 11240585
Alignment:
Q  1 ttatttcacttttcattgaagtttggagattgcaacttagtttggtttctagatctggattcattaaatctcattgttgatttatatagtctttaaactt 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |  | ||||| |||||    
T  11240700 ttatttcactttccattgaagtttggagattgcaacttagtttggtttctagatctggattcattgaatctcattgttgatttctgaaatctttgaactt 11240601  T
Q  101 aaagatatgtataaga 116  Q
     ||| |||||||||||    
T  11240600 gaaggtatgtataaga 11240585  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 22278797 - 22278742
Alignment:
Q  1 ttatttcacttttcattgaagtttggagattgcaacttagtttggtttctagatct 56  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  22278797 ttatttcacatttcattgcagtttggagattgcaacttagtttggtttctagatct 22278742  T

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Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 11759275 - 11759390
Alignment:
Q  1 ttatttcacttttcattgaagtttggagattgcaacttagtttggtttctagatctggattcattaaatctcattgttgatttatatagtctttaaactt 100  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |  | ||||  |||||    
T  11759275 ttatttcactttccattgaagtttggagatttcaacttagtttggtttctagatctggattcattaaatctcattgctgatttctgaaatcttcgaactt 11759374  T
Q  101 aaagatatgtataaga 116  Q
     ||| |||||||||||    
T  11759375 gaaggtatgtataaga 11759390  T

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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 129807 - 129706
Alignment:
Q  15 attgaagtttggagattgcaacttagtttggtttctagatctggattcattaaatctcattgttgatttatatagtctttaaacttaaagatatgtataa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |  | ||||| ||||| ||| |||||||||    
T  129807 attgaagtttggagattgcaacttagtttggtttctagatctggattcattgaatctcattgttgatttctgaaatctttgaacttgaaggtatgtataa 129708  T
Q  115 ga 116  Q
    ||    
T  129707 ga 129706  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 34905622 - 34905710
Alignment:
Q  16 ttgaagtttggagattgcaacttagtttggtttctagatctggattcattaaatctcattgttgatttatatagtctttaaacttaaag 104  Q
    ||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||| | |||||||| |  | ||||| |||||||||    
T  34905622 ttgaagtttggagattgcagcttagtgtggtttatagatctggattcattaaatctcttggttgatttctgaaatctttcaacttaaag 34905710  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 34905213 - 34905254
Alignment:
Q  24 tggagattgcaacttagtttggtttctagatctggattcatt 65  Q
    ||||||||||| ||||||||||||| ||||||| ||||||||    
T  34905213 tggagattgcagcttagtttggtttatagatctagattcatt 34905254  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 36230404 - 36230289
Alignment:
Q  1 ttatttcacttttcattgaagtttggagattgcaacttagtttggtttctagatctggattcattaaatctcattgttgatttatatagtctttaaactt 100  Q
    |||||||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |  | |||||||||||    
T  36230404 ttatttcactttccgttaaagtttggagattgcaacttagtttggtttctagatctgaattcatgaaatctcattgttgatttctgaaatctttaaactt 36230305  T
Q  101 aaagatatgtataaga 116  Q
     ||| ||| |||||||    
T  36230304 gaaggtatatataaga 36230289  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 13736915 - 13737003
Alignment:
Q  16 ttgaagtttggagattgcaacttagtttggtttctagatctggattcattaaatctcattgttgatttatatagtctttaaacttaaag 104  Q
    ||||||||||||||||||| |||||| |||||  ||||||||||||||||||||||| | |||||||| |  | ||||| |||||||||    
T  13736915 ttgaagtttggagattgcagcttagtgtggttcatagatctggattcattaaatctcttggttgatttctgaaatctttcaacttaaag 13737003  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 13738982 - 13739070
Alignment:
Q  16 ttgaagtttggagattgcaacttagtttggtttctagatctggattcattaaatctcattgttgatttatatagtctttaaacttaaag 104  Q
    ||||||||||||||||||| |||||| |||||  ||||||||||||||||||||||| | |||||||| |  | ||||| |||||||||    
T  13738982 ttgaagtttggagattgcagcttagtgtggttcatagatctggattcattaaatctcttggttgatttctgaaatctttcaacttaaag 13739070  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 26889032 - 26888983
Alignment:
Q  1 ttatttcacttttcattgaagtttggagattgcaacttagtttggtttct 50  Q
    |||||||| ||| | ||||||||||||||||||| ||||||||| |||||    
T  26889032 ttatttcattttcctttgaagtttggagattgcagcttagtttgatttct 26888983  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 44213083 - 44213194
Alignment:
Q  15 attgaagtttggagattgcaacttagtttggtttctagatctggattcattaaatctcattgttgatttatatagtctttaaacttaaagatatgtataa 114  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||| |||||||||  | |||||||| |  | ||||||||||||||| |||||||||    
T  44213083 attgaagtttggaaattgcatcttagtttggtttttagatctggatttattaaatctgttggttgatttctgaaatctttaaacttaaaggtatgtataa 44213182  T
Q  115 gactttctttat 126  Q
    ||||||||||||    
T  44213183 gactttctttat 44213194  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 15746340 - 15746277
Alignment:
Q  1 ttatttcacttttcattgaagtttggagattgcaacttagtttggtttctagatctggattcat 64  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15746340 ttatttcactttccattgaagtttggagattgcaacttagtttggtttctagatctggattcat 15746277  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 17335564 - 17335619
Alignment:
Q  1 ttatttcacttttcattgaagtttggagattgcaacttagtttggtttctagatct 56  Q
    ||||||||| |||||||  | |||||||||||||||||||||||||||||||||||    
T  17335564 ttatttcacatttcattacaatttggagattgcaacttagtttggtttctagatct 17335619  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 38657300 - 38657341
Alignment:
Q  24 tggagattgcaacttagtttggtttctagatctggattcatt 65  Q
    ||||||||||| ||||||||||||| ||||||| ||||||||    
T  38657300 tggagattgcagcttagtttggtttatagatctagattcatt 38657341  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 43881752 - 43881634
Alignment:
Q  1 ttatttcacttttcattgaagtttggagattgcaacttagtttggtttctagatctggattcattaaatctcattgttgatttatatagtctttaaactt 100  Q
    |||||| | ||| ||||||||||||||||||||| || |||||| |||||||||||||||| |||||||||  | |||||||| |  | |||||||||||    
T  43881752 ttattttattttccattgaagtttggagattgcatctcagtttgatttctagatctggatttattaaatctgttggttgatttctgaaatctttaaactt 43881653  T
Q  101 aaagatatgtataagacttt 120  Q
    |||| |||||||||||||||    
T  43881652 aaag-tatgtataagacttt 43881634  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 15572665 - 15572577
Alignment:
Q  16 ttgaagtttggagattgcaacttagtttggtttctagatctggattcattaaatctcattgttgatttatatagtctttaaacttaaag 104  Q
    ||||||||||||||||||| |||||| |||||  ||||||||||||||||||||||| | |||||||| |  | ||||| |||||||||    
T  15572665 ttgaagtttggagattgcagcttagtgtggttcatagatctggattcattaaatctcttggttgatttctgaaatctttcaacttaaag 15572577  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 18457560 - 18457500
Alignment:
Q  1 ttatttcacttttcattgaagtttggagattgcaacttagtttggtttctagatctggattcatt 65  Q
    |||||||||||| |||||||||||||||||||||    ||||| |||||||||||||||||||||    
T  18457560 ttatttcactttccattgaagtttggagattgca----agtttagtttctagatctggattcatt 18457500  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 48735278 - 48735397
Alignment:
Q  1 ttatttcacttttcattgaagtttggagattgcaacttagtttggtttctagatctggattcattaaatctcattgttgatttatatagtctttaaactt 100  Q
    |||||| | ||| ||||||||||||||||||||| || |||||| |||||||||||||||| ||||| |||  | ||||||||||  | |||||||||||    
T  48735278 ttattttattttccattgaagtttggagattgcatctcagtttgatttctagatctggatttattaactctgttggttgatttatgaaatctttaaactt 48735377  T
Q  101 aaagatatgtataagacttt 120  Q
    |||| |||| ||||||||||    
T  48735378 aaaggtatgcataagacttt 48735397  T

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Target: scaffold0604 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 7647 - 7698
Alignment:
Q  14 cattgaagtttggagattgcaacttagtttggtttctagatctggattcatt 65  Q
    ||||||||||||||||||||| ||||||||||||| |||||||| |||||||    
T  7647 cattgaagtttggagattgcatcttagtttggtttgtagatctgaattcatt 7698  T

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