View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21643_high_6 (Length: 486)
Name: NF21643_high_6
Description: NF21643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21643_high_6 |
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| [»] scaffold1636 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 23 - 474
Target Start/End: Original strand, 9938532 - 9938983
Alignment:
| Q |
23 |
aagaattaagacatttcacagatgcctagtttctccctcaatttgcaaaaggtttccagcttcaaaggccaagtcataatatctgcaatctgttcttgag |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
9938532 |
aagaattaagacatttcacagatgcctagtttctccctcaatttgcaaaaggtttccagcttcaaaagccaagtcataatatctgcaatctgttcctgag |
9938631 |
T |
|
| Q |
123 |
tactctcaaccactccttcttttgtaagatctctgagaaagtggtatctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagttt |
222 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9938632 |
tactctca-ccactccttcttctgtaagatctctgagaaagtggtatctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagttt |
9938730 |
T |
|
| Q |
223 |
gatagaggaactattatcacatagtataactgtgcactcaatatggtaacaaagttgagtctggatgtcttagttgcttataggcgtgctgaaaatgatg |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9938731 |
gatagaggaactattatcacatagtataactgtgcactcaatatggtaacaaagttgagtctggatgccttagttgcttataggcgtgctgaaaatgatg |
9938830 |
T |
|
| Q |
323 |
tatgtaactttcttggtcgaccattgagttgtcctctaaccagtctattcccatgtaatctttattcggaaaatgtaattgaggggaggatatttttgaa |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
9938831 |
tatgtaactttcttggtcgaccattgagttgtcctctaactggtctattcccatgtaatctttattcgaaaaatgtaattgaggggaggatatttttgga |
9938930 |
T |
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| Q |
423 |
ct-tgtattacaaacaaatttgcagctcgaacatatttctttctcccgatatt |
474 |
Q |
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| T |
9938931 |
ctgcgtattacaaacaaatttgcagctcaaacatatttctttctcccgatatt |
9938983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 40609865 - 40609935
Alignment:
| Q |
173 |
acatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgatagaggaactattatcaca |
243 |
Q |
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| T |
40609865 |
acatctatatgtttgcatctaccatgcatgactggattcttagatagctttattgatgagctattatcaca |
40609935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 17536300 - 17536385
Alignment:
| Q |
158 |
agaaagtggtatctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgatagaggaactattatcaca |
243 |
Q |
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| T |
17536300 |
agaaaatgatatcgcacatctatgtgtttacttctcccatgtaaaactgggttcttggagagtttgatagttgaactattatcaca |
17536385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 126 - 243
Target Start/End: Original strand, 30967099 - 30967216
Alignment:
| Q |
126 |
tctcaaccactccttcttttgtaagatctctgagaaagtggtatctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgat |
225 |
Q |
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||||||| | ||||| |||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||| || || ||||| | |||||| || |
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| T |
30967099 |
tctcaactattccttattttgtaagatccctgagaaagtggtatctaacatctatatgtttacacttcccatgcaatacaggatttttgggcagtttaat |
30967198 |
T |
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| Q |
226 |
agaggaactattatcaca |
243 |
Q |
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||| |||||||||||||| |
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| T |
30967199 |
agatgaactattatcaca |
30967216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 14178910 - 14178835
Alignment:
| Q |
168 |
atctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgatagaggaactattatcaca |
243 |
Q |
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||||||||||||| || |||||||| |||||||||| ||||| |||||| || |||||||||||||||||||| |
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| T |
14178910 |
atctcacatctatgtgcttgcatcttacatgcatcacagggttcgtagacaactttatagaggaactattatcaca |
14178835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 42971937 - 42971834
Alignment:
| Q |
140 |
tcttttgtaagatctctgagaaagtggtatctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgatagaggaactattat |
239 |
Q |
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||||| ||||| || || ||||| |||||||| ||||| || |||||||||||||||||||| | || ||||| ||||| || || || |||||||||| |
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| T |
42971937 |
tctttagtaaggtcccttagaaaatggtatctaacatcaatgtgtttgcatctcccatgcatgataggattttttgacagcttaatggaagaactattat |
42971838 |
T |
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| Q |
240 |
caca |
243 |
Q |
| |
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|||| |
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| T |
42971837 |
caca |
42971834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 47144776 - 47144730
Alignment:
| Q |
170 |
ctcacatctatatgtttgcatctcccatgcatcactgggtttttaga |
216 |
Q |
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|||||||||||||| ||||||||||||||||| ||||| || ||||| |
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| T |
47144776 |
ctcacatctatatgcttgcatctcccatgcataactggattcttaga |
47144730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1636 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1636
Description:
Target: scaffold1636; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 671 - 610
Alignment:
| Q |
140 |
tcttttgtaagatctctgagaaa-gtggtatctcacatctatatgtttgcatctcccatgca |
200 |
Q |
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|||||||||||||| || | ||| ||| || ||||||||||||||||||||||| ||||||| |
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| T |
671 |
tcttttgtaagatccctcaaaaaagtgatacctcacatctatatgtttgcatcttccatgca |
610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 45825234 - 45825319
Alignment:
| Q |
158 |
agaaagtggtatctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgatagaggaactattatcaca |
243 |
Q |
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||||| || |||| ||||||||| ||||| | ||||||||| | |||||||| || || |||||||||| |||||||||||||| |
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| T |
45825234 |
agaaaatgatatcgcacatctatgtgtttacttctcccatgtaaaactgggttcttggagagtttgatagttgaactattatcaca |
45825319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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